Rickettsia massiliae AZT80: RMB_02740
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Entry
RMB_02740 CDS
T01758
Name
(GenBank) formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
rmi
Rickettsia massiliae AZT80
Pathway
rmi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rmi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RMB_02740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rmi03400
]
RMB_02740
Enzymes [BR:
rmi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
RMB_02740
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
RMB_02740
DNA repair and recombination proteins [BR:
rmi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
RMB_02740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Ribosomal_S13
IBR_1
HTTM
Motif
Other DBs
NCBI-ProteinID:
AFB31396
UniProt:
H6QI96
LinkDB
All DBs
Position
complement(490334..491173)
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AA seq
279 aa
AA seq
DB search
MPELPEVETLKNSLKDKLIGLIVENVELKRDNLRYKLSPLLATEILNTNILDVRRRAKYL
IIDFNNDYSLIVHLGMSGRFTLQSANYKTQKHDHVIFDLSNGEKLIFNDTRRFGMIYSFK
TDLLEQEFFNDLGIEPFSDLLTLEYLKDKLQTRKIPIKNLIMDNRVIVGVGNIYASESLH
LARIHPDKSGSDLRDDEIENLIKSIRDVLTKAITAGGTTLKDFVNGDNKPGYFTQQLTVY
GKEGQSCLSCSSTIIKTKHSGRSTFYCKTCQYRLASFTI
NT seq
840 nt
NT seq
+upstream
nt +downstream
nt
atgccggaacttcctgaagtagaaactcttaaaaactctctaaaagataagctaatcggg
cttattgtagaaaatgtagagttaaaaagagataatttacgttataagctatccccgctt
ttagctacagaaatcttaaatactaatatactggatgttaggcgtcgtgcaaaatattta
attatagattttaataatgattattctttaatagttcatctaggcatgagcggtagattt
actctgcaatctgctaattataaaactcaaaaacacgatcatgtgatttttgatttaagt
aacggcgaaaagttaattttcaacgatactagacgcttcggtatgatttatagttttaag
actgatctcttagaacaagaattttttaatgatttaggcatagagcctttttctgattta
ttgacgttagaatatctaaaagataagctacaaactagaaaaataccgataaaaaacttg
attatggataatagagttatagtcggagtcggtaatatctatgcttccgaaagtcttcat
ttagctagaattcatccggataaatcaggtagcgatttaagggatgatgaaatagaaaat
ttaattaaatcaattagagatgtgttaactaaagctataactgccggcggtactactctt
aaagattttgtaaacggcgataacaaacctggttattttactcagcaacttacggtttac
ggtaaagagggacaaagttgtttaagctgctctagcactattatcaagacaaaacattca
ggcagaagtactttttattgtaaaacttgccaatatagattggcaagttttacaatttaa
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