Rickettsia massiliae AZT80: RMB_04505
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Entry
RMB_04505 CDS
T01758
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rmi
Rickettsia massiliae AZT80
Pathway
rmi03410
Base excision repair
rmi03430
Mismatch repair
rmi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rmi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RMB_04505
03430 Mismatch repair
RMB_04505
03440 Homologous recombination
RMB_04505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rmi03400
]
RMB_04505
DNA repair and recombination proteins [BR:
rmi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
RMB_04505
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
RMB_04505
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RMB_04505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AFB31684
UniProt:
H6QJ34
LinkDB
All DBs
Position
complement(776983..778746)
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AA seq
587 aa
AA seq
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MKPQASINGKIWQQKLINEDIVTELCRSFKISDLLARIVSLRVNNLEEVENFLIPKIKNL
LPDPFHLLDMEKAVDRTVTAILNNQKICIFADYDVDGATSAALLKNIFRDLNILCDIYVP
DRIAEGYGPTPFAMQKIKDNGTELLITVDCGAMAHEALKYAKDVNLDVIVIDHHITTEIL
PDAVAIVNPNRIDEKSEYKHLAAVGVAFLFTTAILSNLKKQNYFTQTMLQPNLMKYLDLV
ALGTVCDMMKLTGLNRAFVASGLKIMQQRQNIGIKTLYDMAGLNEIPKCYHLGFILGPRI
NAGGRVGKSSLGANLLSTSCSNEAKKLAEELEKHNNERKVIELLMIEEAMEIALTQQDSS
LLFIVKEGWHPGVIGIVAGKLKEKFDKPVAVIALNDGIGKASCRSILGIDFGAEIINAKS
KDLLIAGGGHAMAAGFTVTADKLQELQNFFNNAFRISINKLENYKHAEYDIELTVNSVNF
PLMEELNTLEPFGQGNHEPIFKFDDLFVLKADIVGSKHIKCMLVPNKRGFGNKALSAIAF
NSVGTAFEDVLLSSKAKNIAAIGTLKTNNWQGNYTIQLIIKDILLKE
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccacaagcatctataaacggtaaaatctggcagcaaaaactgattaacgaagat
atagtcaccgaattatgtcgtagttttaaaattagtgatttacttgctaggatagtatca
ttaagagtaaataatctagaggaagtagaaaattttttgataccgaaaatcaaaaattta
ttacctgatccttttcatctacttgatatggaaaaggctgtagatagaaccgttacagct
attttaaataaccaaaaaatatgtatctttgccgattatgatgtagacggtgctacttca
gccgctttacttaaaaatatttttagagatttaaatatactatgtgatatttatgttccc
gatcgtatagctgaaggatacggtcccactccttttgctatgcaaaaaattaaagataac
ggcacagaattattaattacggttgattgcggtgctatggcacatgaagccctaaaatac
gcaaaagacgttaaccttgatgttatagtaatcgatcatcatataactacggaaatatta
ccggatgcagtagctatagtaaatccaaatcgtattgatgaaaaaagcgaatataaacat
ttggcagccgtaggagttgctttcttatttacaactgcaatattatcgaatttaaagaag
caaaattatttcacgcaaacaatgcttcagcctaatctaatgaagtatctagatttagtg
gctcttggtactgtttgtgatatgatgaaattaacaggcttaaatcgtgcatttgttgca
agcggattgaaaataatgcaacaaaggcaaaatatagggattaaaacattatatgatatg
gcagggcttaatgaaataccaaaatgttatcatttagggtttattctaggtccgcgtatc
aatgcgggcggtagagtaggaaagtcaagtttaggggctaatctcctatctactagttgt
tctaatgaagcaaaaaaattagctgaagaacttgaaaaacataataatgagcgtaaagta
attgagttattaatgatagaagaagcgatggaaattgctttgacacaacaagatagtagt
ttattatttatcgtaaaagaaggatggcatccaggcgttataggaatcgttgccggcaaa
ttaaaagaaaaatttgataagccggtggcagttatagctttaaatgacgggattggtaaa
gcttcatgccgttctattttaggtattgattttggtgctgaaattatcaatgctaaaagc
aaagacttgctaatagcaggcggaggtcatgctatggcggcaggttttaccgtaactgct
gacaaattacaagaattgcagaatttttttaataatgcttttagaattagtataaataaa
ctagaaaattataagcatgcggaatatgatattgagttaacggttaatagtgtgaatttc
cctttaatggaggaattaaacactttagagcctttcggtcaaggaaatcatgagcctata
tttaaattcgatgatttatttgtattaaaagcggatatcgttggaagtaagcatattaaa
tgtatgcttgttccaaataagcgaggctttggtaataaagccttatctgctattgctttt
aattcggtaggaactgcatttgaagatgttttattaagctctaaagcaaaaaatattgcc
gcaataggaacgttaaaaactaataattggcaaggtaattatactattcaattaattata
aaagatatacttctaaaagagtag
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