Rickettsia massiliae AZT80: RMB_04905
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Entry
RMB_04905 CDS
T01758
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rmi
Rickettsia massiliae AZT80
Pathway
rmi03420
Nucleotide excision repair
rmi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rmi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RMB_04905
03430 Mismatch repair
RMB_04905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rmi03400
]
RMB_04905
Enzymes [BR:
rmi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RMB_04905
DNA repair and recombination proteins [BR:
rmi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RMB_04905
MMR (mismatch excision repair)
Other MMR factors
RMB_04905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
AAA_11
AAA_12
DUF87
DEAD
ResIII
GpA_ATPase
Motif
Other DBs
NCBI-ProteinID:
AFB31749
UniProt:
H6QJ99
LinkDB
All DBs
Position
complement(845893..847854)
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AA seq
653 aa
AA seq
DB search
MQNQDFIYTLNPEQQKAVLHTEGPLLLLAGAGTGKTKVLTSRIANIIHQNLASPQNILAV
TFTNKAAKEMAERVNSLINCYGLNIGTFHSMAARILRDQIEHLNLGLNNRFTIISHDDQL
KLVKDIVKLKDIDTKKYAPKLMHIIISRWKDQGLLPTKLSVSDTNLPLQRVAKLVYEEYQ
KNLLISNVLDFGDLLLYNNELFIKNPEILRYYQEKYRYILIDEYQDTNVVQYLWARMLAS
LYKNICCVGDDDQSIYGWRGAEVGNILRFEKDFAGATIIKLEQNYRSTLPILAAASNVIN
NNKNRHGKTLWTDRESGEKIKIISCWSDKEEARYIAGEIDKLVREDRYNAGNIAILVRAG
FQTRSFEEAFINSAMPYKIIGGLRFYERMEIRDVLAYIRISLNQNDNLALERIINVPKRA
IGAASLNKIRVYALERNISNFAAIKEMLEIGEIKAKSYETLKELITKIDNWYERFSIDAP
INVVKAILDDSGYLEMLQEEKTEEAFGRIENINEMLRVIAEFNDVHDFIEHSSLVMENEV
LETNYGGSVTIMTLHAAKGLEFDVVFLPGWEEGIFPSQRSLDEDGEKGLEEERRIAYVGI
TRAKKDLYITHAESRKIFYEIVRSYPSRFITEIPDEITIRTSSMKKYNSFYKF
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaatcaagatttcatatatacattaaatccagagcagcaaaaagcagttcttcac
actgaaggaccgcttttattgcttgcaggtgcagggacaggtaaaacaaaggtacttacc
tcaagaatagctaatattattcaccaaaatttagcctcacctcaaaatattctagccgtt
acttttactaataaagctgctaaagaaatggctgaaagagttaatagtctaattaattgt
tatggtcttaatataggcactttccactcaatggcagctaggatattacgtgaccagatt
gagcatttaaatcttggtttaaataatagatttactattattagtcatgatgatcaatta
aaactagtgaaagatatagtaaagctaaaagatattgatactaaaaaatatgctcctaaa
ttaatgcatatcataatttctagatggaaagatcaaggattattaccaactaaactatca
gtatcagatactaatttaccgctgcagagggttgcaaaacttgtatacgaagaatatcag
aaaaatttacttatttctaatgttttagattttggagatttgctactttataataatgag
ctttttattaaaaaccctgaaatactaagatattaccaagaaaaatatcgatatatttta
atcgatgaatatcaagacactaacgttgtccagtatttatgggcaagaatgctcgcaagt
ttatataaaaatatttgttgtgtaggggatgatgatcaatctatttatggttggcgagga
gcagaagtcgggaatatattacgttttgaaaaagattttgcaggcgcaacaattattaaa
ttagagcagaattatagatcaactttgccaatacttgctgctgcttccaatgttatcaat
aataataaaaaccgtcatggtaaaacgttatggacggatagggaaagcggtgaaaagata
aaaattatctcttgttggagtgataaagaagaagcaagatatatagccggtgaaatagat
aagttagtgcgagaagatcggtataatgccggcaatattgcaatattagtacgagccgga
tttcaaacaagaagttttgaggaagcgtttataaatagtgctatgccttataaaattata
ggcggtttgcggttctatgaacgtatggaaataagagacgtgcttgcttatatccgtata
tctttgaatcaaaatgacaatctagcacttgagcgtattataaatgtgccgaaaagggca
ataggtgcagctagcttaaataaaattagagtctatgcacttgagcgaaatatttctaat
ttcgcagctattaaagaaatgctagaaataggcgagattaaagcaaaatcatatgaaact
ctaaaagagttgattactaaaatcgataattggtacgaaagatttagtatagatgctcca
ataaacgtagttaaagcaatacttgatgattctggttatcttgaaatgcttcaagaagaa
aaaaccgaagaggccttcggtagaatcgaaaatattaacgaaatgcttagagttattgct
gaatttaacgatgttcatgattttatcgaacattcaagcttagttatggagaatgaagtg
cttgaaaccaattatggtggctctgttactataatgaccctgcacgcagctaaagggctt
gagtttgacgtggtatttttaccgggctgggaagagggtatatttccgtctcaaagatct
ctagacgaagacggcgaaaaaggcttagaagaagaacgccgcattgcttatgtcggcatt
acgagagccaaaaaagacctctacattactcatgctgaaagcagaaaaatattttatgaa
atagtccgttcttacccttcaaggttcataaccgaaatccctgatgaaattacgatcagg
acctcttctatgaaaaaatacaattctttttataagttttaa
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