Rickettsia massiliae AZT80: RMB_04960
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Entry
RMB_04960 CDS
T01758
Name
(GenBank) metallo-beta-lactamase family hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
rmi
Rickettsia massiliae AZT80
Pathway
rmi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rmi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RMB_04960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmi03019
]
RMB_04960
Messenger RNA biogenesis [BR:
rmi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RMB_04960
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Lactamase_B_6
DUF4134
DUF4587
DUF826
Motif
Other DBs
NCBI-ProteinID:
AFB31758
UniProt:
H6QJA8
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Position
complement(856294..857976)
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AA seq
560 aa
AA seq
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MSSFNIKKHKNDLLFIPLGGSNEIGMNLNLYHYQGKWLMIDCGSGFADDYLPGVDMIIAD
SSFIEKYKKDIVGLILTHAHEDHLGGVQYLWNSLKCPIYTTTFTANFLKFRLNEYDFAKN
IKIHEVKPGSKINLDPFSLEMVPLTHSAPEMQAIMIRTDAGNILHTGDWKFDNDPILGKK
ADEEFLKSYGDEGVLALVCDSTNVFNKGSSGSEGDVRKSLVDIIAGCLQMVVVSTFASNL
ARLDTIIHAAGLAGRKVVLTGRSLHRMMLAAQESGYLKDIAPLISERDVSRFRREELLVI
ATGCQGEAMAATAKLASNSHPSIKLVPKDTMIFSSKIIPGNEKKIFRLFNIFVKAGVEVI
TERDHFVHVSGHPSIDELQKMYSLIRPNICIPVHGEPVHIHEHVKLAKKNGIKQAVEVEN
GSVVLLEPNNAKVISKVENGYLAVDGNYLLPVESPIFKARRRMRESGIVVASVVIDKKGL
LAANPMLSMPGLLDPKEDMALVNLIKNDIKELVTIQNKQAKKALSDEQVIEAIKGTIRKT
LKQEINKSPVIIVNLEKAVE
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcattcaatatcaaaaagcataaaaatgatctgctatttataccgctaggggga
tctaatgaaataggtatgaatcttaatctttaccattatcaaggtaaatggttaatgatt
gattgtggtagcggttttgccgatgattatttacccggtgttgatatgataattgctgat
agcagctttattgagaaatataaaaaagatatagtaggtctgattttaactcatgctcac
gaggatcatttaggtggagtccaatatttatggaatagccttaaatgtcctatttatact
actacttttacagcaaattttttaaaatttcgtttaaatgaatatgattttgctaaaaat
ataaaaattcatgaagtaaaacccggtagtaaaataaatctagatcctttttccttagag
atggtgccactgactcactcggctcctgaaatgcaagcaattatgatccgtacggatgca
ggtaatattttacatacgggagattggaaatttgataacgatccgatacttgggaaaaaa
gccgatgaggagtttttaaaatcttacggagatgaaggggttcttgcacttgtttgtgat
tcaactaacgtatttaataaaggaagctcaggttctgagggggatgttagaaaaagttta
gtagatattatagccggttgtcttcaaatggtagtagtttcaacctttgcctctaattta
gcacggcttgatacaataattcatgctgcagggcttgcgggtagaaaagtagtcttaacc
ggtagaagtttgcaccgtatgatgcttgctgcgcaggaaagtggctatttgaaagatatt
gctcctctaattagtgaacgtgatgttagcagatttagaagagaagaattattagtaatt
gctaccggttgtcaaggtgaggctatggctgccaccgcaaaactggctagtaattctcac
ccgtctataaagcttgttcctaaggatacaatgattttttcttcaaaaattattccgggt
aatgaaaagaaaatattcaggctatttaatatatttgttaaagccggtgtagaagttatt
accgagcgagaccattttgtacatgtttcaggacatccatcgattgacgagctacaaaaa
atgtattctctaattagaccgaatatttgtatacctgttcacggcgagcctgtacatatt
catgaacatgttaagcttgctaagaaaaacggcataaaacaggcagtagaggttgaaaac
ggtagtgtagtactgcttgaacctaataatgcaaaagtaatttcaaaggttgaaaacggt
tatttagctgttgacggtaattatttgctgcccgttgaatctccgattttcaaagctaga
agacgtatgcgtgagtcgggtatcgtggtagcatcagtagtcattgataaaaaaggactg
cttgctgcaaacccaatgctgtctatgcccgggctgcttgatccgaaagaggatatggca
ttagttaacctcattaaaaacgacattaaagaacttgttactattcaaaataaacaggct
aaaaaagcattgtcggatgaacaagtaatcgaggcaataaaaggaacaatccgtaaaacc
ttaaaacaagaaattaataagtcacccgttataatagtaaatcttgagaaagctgtggag
tag
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