Rhodoferax mekongensis: RAN89_00600
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Entry
RAN89_00600 CDS
T10170
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rmk Rhodoferax mekongensis
Pathway
rmk03020
RNA polymerase
Brite
Enzymes [BR:
rmk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RAN89_00600 (rpoC)
Transcription machinery [BR:
rmk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RAN89_00600 (rpoC)
DNA repair and recombination proteins [BR:
rmk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RAN89_00600 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
WNO04961
LinkDB
All DBs
Position
complement(139327..143553)
Genome browser
AA seq
1408 aa
AA seq
DB search
MKSLLDLFKQFTPDEHFDAIKIGMASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSL
PSRLGLVLDMTLRDIERVLYFEAYVVTDPGMTPLKKYSIMSEDDFDAKFQEYGDEFTAKM
GAEGIKDLLESIDIDGSIEKLRNDLTGSELKIKKNAKRLKVLEAFKKSGIKPEWMVLDVL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNSRLRRLLELKAPEIIARNEKRMLQEA
VDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVITVGPTLK
LHQCGLPKLMALELFKPFIFARLEAMGIATTIKAAKKEVESGTPVVWDILEEVIKEHPVM
LNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSVEAQMEART
LMLASNNVLFPANGEPSIVPSQDVVLGLYYTTRERINGKGEGLVFADTGEVQRAFDAGQV
ELNARINVRLTEWTKNKETGEFVPETKLWETTAGRALLSEILPKGLPFANINKALKKKEI
SKLINVSFRKCGLKETVVFADKLLQSGFRLATKAGISICIDDMLVPSEKHDIIGRAQKEV
KEIEQQYVSGLVTAGERYNKVVDIWGKSGDEVSKVMMAKLSKEKVTDRHGNQVDQESFNS
IYMMADSGARGSAAQIRQVAGMRGLMAKPDGSIIETPITANFREGLNVLEYFISTHGARK
GLADTALKTANSGYLTRRLVDVTQDLVVTEQDCGTHEGSLMRAIVEGGEVIESLRDRVLG
RTAADDVLHPETRAVLLNAGDMLEEDEIEMLEAAGVDEVKVRTALTCETRFGICAKCYGR
DLGRGGLINGGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAIASSVEAKSNGNIGFN
ATMRYVTNSKGELVVIARSGEIIIHDEHGRERERHKVPYGAVLTVKADQTVKAGAILANW
DPLTRPIITEFAGKAHFENVEEGLTVAKQVDEVTGLSTLVVIDPKRRGAAKVVRPQVKLI
DASGHEVKIPGTDHSVTIGFPVGALVQVRDGQDVGPGEVLARIPIEGQKTRDITGGLPRV
AELFEARSPKDKGVLAEVTGTVSFGKETKGKVRLQITDPEGKVWEELVPKEKNILVHEGQ
VVNKGESVVDGPADPQDILRLLGSEELARYIVDEVQDVYRLQGVKINDKHIEVIVRQMLR
RVVVENAGDSGYINGEQVERSEMLNTNDALRAEGKIPATYTNLLLGITKASLSTDSFISA
ASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGLAYHEARKVRETMDDAERRA
IAEAEAAELAGTADLTEDAAAGDDSAAE
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
atgaaatctttactcgacctgttcaagcagttcacgcccgatgagcattttgatgccatc
aagattggcatggcgtcgcccgaaaaaatccgctcctggtctttcggcgaagtcaaaaaa
cccgaaactatcaactaccgcaccttcaagcctgagcgtgacggcctgttctgcgcgaag
attttcggacccatcaaggactacgaatgcctgtgcggcaagtacaagcgcctgaagcac
cgcggtgtgatttgcgaaaagtgcggtgttgaagtcacacaaaccaaagtgcgtcgcgaa
cgcatgggtcatatcgacctggctgctccttgtgcgcatatctggttcctgaagtccctg
ccaagccgtttgggcttggtattggacatgacactgcgtgacattgaacgcgtgttgtat
ttcgaagcgtacgtggtgaccgaccccggcatgaccccgctgaagaagtacagcatcatg
tccgaggacgactttgacgctaaattccaggaatacggtgacgagttcaccgccaagatg
ggcgcagaaggtatcaaggacttgctggagagcatcgacatcgatggctccatcgagaag
ctgcgcaacgacctgaccggttctgagctgaagatcaagaagaacgccaagcgcctcaag
gtgctggaagccttcaagaaatccggtatcaagcctgagtggatggtgttggatgtgctg
cccgtgctgccgccggatctgcgtcccttggttcctctggacggcggccgttttgcgacc
tccgacttgaatgatctgtaccgccgcgtgatcaaccgcaatagccgtctgcgccgtttg
ctggagttgaaggcgcccgaaatcatcgcccgcaacgaaaagcggatgctgcaagaggcc
gtggacagtctgctggacaacggccgtcgcggcaaggctatgacaggcgccaacaagcgc
gcactgaagtctttggccgacatgatcaagggcaagagcggtcgcttccgtcagaacttg
ctgggcaagcgcgtggattactccggtcgttccgtgattaccgtaggtccaacccttaaa
ttgcaccagtgcggtctgcccaagctgatggccttggagttgttcaagcccttcatcttc
gcgcgcctggaagccatgggcattgcgaccaccatcaaggctgccaagaaggaagtcgaa
tccggcacccccgtggtgtgggacattctggaagaggtcatcaaagagcaccccgtgatg
ctgaaccgtgcgcccacgctgcaccgtttgggtattcaagcttttgagcctatcctgatt
gaaggcaaggccatccagttgcaccctctcgtttgcgcggccttcaacgccgacttcgac
ggtgaccagatggctgttcacgtaccactgtcggtggaagcacaaatggaagcacgcact
ttgatgcttgcgtccaacaacgtgctgtttcccgcgaacggcgagccatccattgttcct
tcccaagacgtggtgttgggcttgtactacacgacacgtgaacgtatcaacggcaaagga
gaaggcttggtgttcgcggacaccggggaggtccagcgcgccttcgatgcgggtcaagtg
gagttgaatgcccgcatcaacgtgcgtctgaccgagtggaccaaaaacaaggagactggc
gagttcgtgccagaaaccaagttgtgggaaaccactgcaggccgtgccttgttgtctgaa
atcctgcctaagggtctgcctttcgcgaacatcaacaaagcgctgaagaagaaggagatt
tccaagctcatcaacgtgtccttccgcaagtgcggattgaaggaaaccgtagtgtttgcg
gacaagttgttgcaaagcggcttccgtttggccaccaaggccggtatttcgatctgtatc
gacgatatgttggtgccatctgaaaagcacgacatcatcggtcgtgcccagaaggaagtg
aaggaaatcgagcaacagtacgtctctggtctggtgacggcaggagagcgctataacaag
gtagtggacatctggggcaagtcgggtgacgaagtgtccaaggtgatgatggcgaagttg
tccaaagaaaaggtcaccgatcgtcacggcaatcaagtcgaccaggagtccttcaactcc
atctacatgatggcggactccggtgcccgcggctctgctgcccaaatccgtcaggtggcc
ggtatgcggggtctgatggccaagcctgatggctccatcattgaaacgcctattaccgcg
aacttccgcgaaggtctgaacgtgttggagtacttcatctccacgcacggggcccgtaag
ggtcttgccgatactgcgttgaagacagcgaactccggttatttgacacgccgtctggtt
gatgtgacccaggacttggtggtgacagagcaggattgcggtacccacgaaggttcgttg
atgcgagctattgtggaaggtggtgaggtgatcgagtccttgcgtgaccgtgtccttggc
cgcaccgctgctgacgatgtattgcatccagaaacccgcgctgtcctgctgaatgctgga
gacatgctggaagaagacgaaattgaaatgctggaggcggctggcgtcgacgaagtcaag
gttcgcactgcattgacctgcgaaacacgtttcggtatttgtgccaagtgctacggacgc
gacttgggtcgtggtggtttgatcaatggcggcgaagccgtcggtgtgattgcggcgcag
tctattggtgagcctggtacccagctgaccatgcgtaccttccacatcggtggtgccgct
tcccgtgctgctatcgcttccagcgtggaagcgaagtccaacggcaatattggcttcaac
gccacgatgcgttacgtcacgaacagcaagggcgaattggtagtgattgcccgctcaggt
gaaatcatcattcatgatgaacatggccgtgagcgcgagcgtcataaggttccgtacggt
gctgtactgactgtcaaggcagaccagaccgtcaaggcgggcgcaatccttgcaaattgg
gacccattgactcgacccatcattaccgagttcgctggtaaagcccacttcgaaaacgtc
gaagaaggcctgactgttgcaaagcaagtggacgaagtgactggtttgtctacgctggtt
gtaatcgatccaaagcgtcgtggcgctgccaaggtggttcgtccacaagtgaagctgatc
gatgcgtctggccatgaagtcaagattcccggtaccgatcactcggtgaccatcggcttc
cccgtaggtgcgttggttcaagtgcgcgacggccaagatgttggccccggtgaagtgctg
gcccgtattccgatcgagggtcaaaagacccgcgacattacgggtggtttgccacgtgtg
gccgagttgttcgaggcccgttcacccaaggacaagggtgtgctggccgaagtgaccggt
acggtgtctttcggcaaggaaaccaaaggcaaggtccggttgcagatcaccgatccggaa
ggcaaggtctgggaagagcttgtgcccaaagaaaagaacattctggtgcacgaaggccag
gtggtcaacaagggcgagtccgtggttgatggtccggcagatccgcaggacatcttgcgt
ttgctcggttcggaagaattggctcgctatatcgtggacgaagtccaagatgtgtaccgc
ttgcaaggcgtgaagatcaacgacaagcacattgaagtgattgtgcgccagatgctgcgt
cgagtggtcgtcgaaaacgcaggtgactctggctacatcaacggtgagcaggtcgagcgc
tccgagatgctcaataccaatgacgctttgcgtgcagaaggcaagattccggcaacatat
accaatttgttgttggggattaccaaagcgtccttgtctaccgacagtttcatctccgct
gcgtcgttccaagaaacgacccgcgtgttgaccgaagccgccatcatgggcaagcgcgac
gagttgcgtggactgaaggaaaacgtgatcgtcggccgtttgattccagcgggtaccggg
ttggcttaccacgaagctcgcaaggttcgcgaaaccatggacgacgcagagcgtcgtgcc
attgctgaagcagaggcggctgaattggcaggcactgcagatctgacggaagatgctgcg
gccggggatgactcagcggccgaataa
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