Rhodoferax mekongensis: RAN89_05635
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Entry
RAN89_05635 CDS
T10170
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
rmk Rhodoferax mekongensis
Brite
KEGG Orthology (KO) [BR:
rmk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rmk03016
]
RAN89_05635
Enzymes [BR:
rmk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
RAN89_05635
Transfer RNA biogenesis [BR:
rmk03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
RAN89_05635
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
Myosin_N
Motif
Other DBs
NCBI-ProteinID:
WNO05908
UniProt:
A0ABZ0B1X0
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All DBs
Position
complement(1187191..1189242)
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AA seq
683 aa
AA seq
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MFVLFEEAGKFMAGRVLSEAEASAQVELDSGKRVKVKGANILIKFEKPAPAEFVAAAQAQ
AAGIELDMAYEFAPDEEFGFADLAKDYFSAQASQAEQAGMLFKLFDTPHYFRRAGKGRFK
KAPAEIIAQALAAIEKKRLIAEQINHWAQELAAGSCPQAIKDQLYKILFKPDKNAPEYKA
VVEASRTTHIAPLDLLQKAGAIASPYLFHWKRFLLENFPKGTGFPAISAPAIADELPVAA
LQAFSIDDSQTTEIDDALSVQGLGSGTVTVGIHIAAPGLAVQPGSPVDVLGRARLSTVYM
PGYKVTMLPDEVVQTYTLMEGRDCPSVSLYVTFNEETLEITNSETKLERVPIAHNLRHDQ
LDSVVTEQWLTDASFNHDNDVQPAAGLREQLSFLHRLARDLKAKREIVRGKPETFNRPDY
NFRLQGNDGAEPQGDETVLISIRQRGAPLDLIVAEAMILANSTWGSWLAEMGVPGIYRSQ
ASLAPGVKVRMGTKALPHAGIGVKAYSWATSPLRRYTDLVNQWQIIACARHGKTAALVAP
FKPKDAELFAIISSFDAAYSAYNGYQGAMERFWTMRYAQQHGITELTASLFKDGMVRADD
IPLVLPVLGAQGLPRHAKVRVKLGEMDLITLDVQGTVLERLDAPVEADNQDEEDDGDDEV
AGPIAIAVDVNEAPEAGGDNPTP
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgtttgtactgtttgaagaagccggaaaattcatggccggccgtgtcctgtccgaggcg
gaagcctctgcgcaggtggagctggattccggcaagcgcgtcaaagtcaagggcgccaac
atcctgatcaagtttgaaaagcccgctccggcggagttcgttgcggccgcccaagcgcag
gcagccggcatcgagctggatatggcctacgagttcgcgcccgacgaagagttcggcttc
gcggacctggccaaagactacttttccgcccaagccagccaggcggagcaggcgggcatg
ctgttcaagctgttcgacaccccgcactacttccgccgtgctggcaaaggtcgcttcaaa
aaggcgcctgccgaaatcattgcccaggctttggctgcgattgagaaaaagcgcctgatt
gccgagcaaatcaaccattgggcccaagagctggctgcgggcagctgcccgcaggctatc
aaggaccagctgtacaagatcctgttcaagccggacaagaacgcccctgagtacaaggcc
gtggtcgaggccagccggaccacccacattgcgcctcttgatctgctgcaaaaggccggt
gcgattgcttcgccctacctgttccactggaaacgctttttgctggagaacttccccaag
ggcaccggctttcccgccattagcgcacccgccattgccgacgagttgccggtggcggcc
ttacaggccttttcgattgacgattcccagaccactgaaattgacgacgccctgagcgtg
caaggcctgggctccggcaccgtgaccgtgggcatccacatcgccgcgcccggcctggcc
gtgcagcccggcagcccggtggacgtgctgggccgcgcccgcctgtccacggtgtacatg
ccgggctacaaggtcaccatgttgcccgacgaggtagtgcagacctacaccctgatggaa
gggagggattgcccgtccgtctcgctctatgtcaccttcaacgaggagacgctggagatc
accaacagcgagaccaagctggaacgtgtgccgattgcccacaatctgcgccacgaccag
ctcgacagcgtggtcaccgagcagtggctgaccgacgcgtcgtttaaccatgacaatgac
gtccagcccgcagcaggtctgcgcgagcagctatcatttttgcaccgcttggcgcgcgac
ctgaaagccaagcgcgagatcgtgcgcggcaaacccgagaccttcaaccgcccggactac
aacttccgcctgcaaggcaacgacggcgctgagccgcaaggcgacgagacggtgctcatc
agcatccgccagcgcggcgccccgctggacctgatcgtggccgaagccatgattctggcc
aacagcacctggggcagctggctcgccgagatgggcgtgcccggcatctaccgaagccag
gcatcgctggcacccggcgtcaaggtacgcatgggcaccaaggccttgccgcatgcgggt
atcggcgtcaaagcgtattcgtgggcgacctcgccactgcgccgctacaccgacctggtc
aaccagtggcagatcattgcctgtgcccgccatggcaagacggcggctttggtcgccccc
tttaagcctaaggacgcggagctgttcgccatcatctcgtcgtttgatgcggcctacagc
gcctacaacggctatcagggcgccatggagcggttctggaccatgcgttacgcgcagcag
cacggcatcaccgagctcaccgccagcctgttcaaagacggcatggtgcgcgcggacgac
attccgctggtgctgcccgtcctgggtgcgcagggactgccccgccacgccaaggtgcgc
gtcaagctgggggagatggacctcatcaccctggatgtgcaaggcacggtgctggaacgt
ctggatgctccggtggaagccgacaaccaggacgaagaggacgacggcgacgacgaggtg
gccggcccgatcgcgattgcggtggatgtgaacgaagcgcctgaagccggcggcgataat
cccaccccgtga
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