Rhodoferax mekongensis: RAN89_05740
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Entry
RAN89_05740 CDS
T10170
Name
(GenBank) sigma-54 dependent transcriptional regulator
KO
K02667
two-component system, NtrC family, response regulator PilR
Organism
rmk Rhodoferax mekongensis
Pathway
rmk02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
rmk00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
RAN89_05740
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
rmk02022
]
RAN89_05740
02035 Bacterial motility proteins [BR:
rmk02035
]
RAN89_05740
Two-component system [BR:
rmk02022
]
NtrC family
PilS-PilR (type 4 fimbriae synthesis)
RAN89_05740
Bacterial motility proteins [BR:
rmk02035
]
Pilus system
Twitching motility proteins
RAN89_05740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
Response_reg
HTH_8
AAA_5
PDE8A_N
AAA
AAA_16
AAA_3
Sigma70_r4
HTH_24
HTH_30
AAA_7
Motif
Other DBs
NCBI-ProteinID:
WNO05929
LinkDB
All DBs
Position
complement(1212797..1214308)
Genome browser
AA seq
503 aa
AA seq
DB search
MASLPVLSASKILVVDDEPDLRTLYELTLLREGHQVDTAGTVQEAMDALARQAYDLVITD
MRLPDGLGIDVLKNLRRQERNERCMVITAYGSAENAVESLKAGAFDYLTKPVDLKLFRTA
VTSALNDTAGPSAGADTARSIARAPDNPAAASTLELMAGTSAAMLAVKERIAKVARSMAP
VLIRGESGTGKELAARALHANSHRAQGPWVAVNCSAIPESLLEAEFFGAKKGAYTGATQD
RAGFFQAAHGGTLFLDEIGDLPLAMQAKLLRAIQERKIRPLGSSTEEAVDVRLVSATHKD
LAAEVAANTFRQDLYYRLNVIDIHLPPLRERKDDLEALCGAILQRICAETGSPIPVISAS
MLEQLKKHPLKGNVRELENLLHRAMALSDGQALEMDAAYADTGPASLSATSEMPSVDTVM
PDINEQAEARAEQSLPPAPPAIPSDLQSHLDAQERDILVRVLTETRFNRTAAAQRLGISL
RQIRYRMERLRIDVPGEDRDKTD
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atggcaagcctccctgtactgagtgcctccaaaatcttggtggtcgacgacgaaccggat
ctgcgcaccctctatgaactgactctgttacgggagggtcatcaggttgacactgcggga
accgtgcaagaggcgatggatgcactggcgcgtcaagcctacgacctcgtgattacggac
atgcgtctgccagatggactcggcattgatgtcttgaagaacctgcgccgtcaagagcgc
aatgagcgctgcatggtgattaccgcctacggttctgctgaaaatgctgtcgaatccctg
aaggcgggtgcctttgactacctgactaaacccgtagacctgaaactattccggaccgcg
gtcacctcggcgttgaacgacaccgcaggcccaagtgcgggggccgatactgccagatca
atagcaagggcgccagacaacccggcagctgcgtcaacgctggaattgatggcggggact
tccgcagccatgttggcggtgaaggaaagaattgccaaagtggctcgcagcatggcacct
gtactgatccggggcgaatccggcacgggcaaagagttggcggccagagcattgcatgcc
aatagccatcgggctcaggggccatgggttgcggtgaactgcagcgcaataccagagtcc
ttgctggaagccgagtttttcggcgccaaaaagggagcctacaccggagcaacccaagac
agggccggcttttttcaggcggcgcatggggggacattatttctcgatgagatcggagat
cttcctctggccatgcaagcaaagctcttgcgcgccatacaggaacgaaagatccgccct
ctggggagcagcaccgaggaggctgtggatgtgcgattggtcagcgccacccacaaagat
ttggcagcagaagtggcagccaacacgttccgccaggatctttattacagactcaatgtc
atcgacatccatttgcctcctttgcgggagcgcaaagacgatctcgaagccctgtgcggt
gccatacttcaacgcatatgcgctgaaaccggaagccccatcccggtgatatcagcatcc
atgctggagcaactaaagaagcacccactcaaaggcaatgtcagagagctggagaacctg
ctacacagggccatggcgctgtcggatggtcaagccctcgaaatggatgccgcatatgca
gacacaggacctgcttcgctgtccgccacctcagagatgccatctgtggatactgtgatg
cctgatatcaacgagcaagcagaggcccgcgcagagcagtctttgccgcctgcaccaccg
gctatacccagtgacctacaaagccacctggacgcccaggagcgggacattctggttcgc
gtgctaacagaaacacgtttcaaccgcactgcggctgctcaacgcttggggatcagcctg
cgccagattcgttatcgcatggagcgcttgcgcatcgacgtgccaggggaagaccgtgac
aaaacagactga
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