Rhodoferax mekongensis: RAN89_08785
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Entry
RAN89_08785 CDS
T10170
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rmk Rhodoferax mekongensis
Pathway
rmk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rmk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RAN89_08785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmk03019
]
RAN89_08785
03009 Ribosome biogenesis [BR:
rmk03009
]
RAN89_08785
Enzymes [BR:
rmk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
RAN89_08785
Messenger RNA biogenesis [BR:
rmk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RAN89_08785
Ribosome biogenesis [BR:
rmk03009
]
Prokaryotic type
rRNA processing factors
RAN89_08785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
WNO06505
LinkDB
All DBs
Position
complement(1809535..1812486)
Genome browser
AA seq
983 aa
AA seq
DB search
MKRMLINATQAEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISKQYFQQGVSASNARIQDAIREGQELLVQVEKEERGNKGAALTTFIS
LAGRYVVLMPNNPRGGGVSRRIEGDDRAELKENMDQLEYPNGMSIIARTAGIGRSAPELQ
WDLNYLLKLWGAIDGAAKGAKGAFLIYQESSLVIRAIRDYFNHDIGDILIDTDDVYEQAQ
QFMAHVMPEHAARVKRYRDDAPLFSRFQIEHQIESAYARTVTLPSGGAIVIDHTEALVSV
DVNSARAIKGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESRNRREVENR
LRDALRQDRARVQFGTISKFGLMEMSRQRLRPALSEGASIPCPRCGGSGHIRDTESSALQ
ILRIIQEESLKDNTASVLCQVPVEVASFLLNEKRTEIAKIELKQRINVLMVPNKTLETPN
YKLERLKHDDPRLDHIEASYKMADDMEEATGVTRRSQEPTNKQTPVIKGVLPDAPAPIAP
PKPEPVKAAPAPVAAPVAAPASKGFFGWIKSLFAAPEAAPAPAAAPAPAKTDDKREGRNG
RDGNRRNQRGDRSGEPRNETRPDNRGERSERGNRNERGERNGRGERAERQDRGNRNERGE
RNSVPRQERMDGEQSKAVGAEISLQADGAPAPQAREGRQERGNRNERGNRGPRNGDRNDN
ATRNAEVNAEAPAAQASAEGVEASAESQGEAREPREGRNRNGRGRRNDRGPRQDEANRVD
QPGELPVAEGTDAASAADVPSEGTTGQEPRERRSRDRYGRDRGNRGSRGENGQRQQADGQ
EASPATFDAAPAPESAPVAPVEAVAPLASASPVAPVAAPVTVATTTAASVVAAPEGRMPK
VVSYALPTEALAQVASSAGLQWVNSDADKIAAVQAAIAAEPKPVHVPRERPAPVVLDDRP
LVLVETRRDLRDMKLPFEENQTA
NT seq
2952 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgctgattaacgccacgcaggctgaagaacgccgcttggctatcgtcgac
ggacaaaaactcctcgactacgaaattgaaattgaaggccgcgaacagcgcaagggcaac
atctacaaagcggtcgtgacccgtgtagagccgtcactggaagcttgctttgtggactac
ggcgaagaccgccacggttttctgcccttcaaggaaatttccaaacagtatttccagcag
ggcgtgtctgcgagcaatgcccgcatccaggacgcgatccgcgaaggccaggagctgctg
gttcaggtcgaaaaagaagaacgtggcaacaagggcgcagctctgaccactttcatctcg
ctggccggccgctatgtggtgctgatgcccaacaacccccgtggtggtggcgtctcacgc
cgcatcgagggtgacgaccgcgccgaactcaaagaaaacatggaccagttggaatacccc
aacggcatgtccatcatcgcccgtaccgccggcatcggccgcagcgcgcccgaactgcag
tgggacctgaactacctcctgaaactctggggcgccatcgacggtgccgccaagggcgcc
aagggtgcgttcctgatttaccaagagtcttctttggttatccgcgcgatccgcgactac
ttcaaccacgacatcggcgacatcctgatcgacaccgatgacgtgtacgagcaggcccag
caattcatggcccacgtgatgcctgagcacgcagcccgcgtgaagcgttaccgtgacgat
gcgccgctgttcagccgcttccagatcgaacaccagatcgaatcggcctatgcccgcacc
gtgaccctgccttccggcggcgccatcgtgatcgaccacaccgaagctttggtttccgtg
gacgtgaactcggcccgcgccatcaagggcggtgatatcgaagaaaccgccacccgcacc
aacctggaagctgctgacgaagtggcccgccagatgcgcttgcgcgacttgggtggcttg
atcgtgatcgactttatcgacatggaagagtcccgcaaccgccgcgaagtggaaaaccgc
ttgcgcgacgcgctgcgccaggaccgcgcccgcgtgcagttcggcaccatttccaaattc
ggtttgatggaaatgagccgccagcgcctgcgcccggctctatccgaaggtgcatccatc
ccctgcccccgttgcggcggctccggccacatccgtgataccgaatccagcgcgttgcag
attctgcgcatcatccaggaagagtccctcaaggacaacaccgcctcggtgctgtgccag
gttcctgtggaagtggcttcgttcctgctgaacgaaaagcgtactgaaatcgccaaaatt
gagctgaagcaacgcatcaacgtgttgatggtgcccaacaagactctggaaactcccaac
tacaagctcgagcgcttgaagcacgacgatccccgtctggaccacatcgaagccagctac
aagatggccgacgacatggaagaagccaccggcgtgacccgtcgctcgcaagagcccacc
aacaagcagacccctgtgatcaagggcgtgctgccggatgcaccggctcccattgcaccg
cccaagcctgagcccgtcaaggctgctccggcaccggtggcagcgcctgttgcagctccg
gcatccaaaggattcttcggatggatcaagagcttgtttgctgcgcctgaagccgcacct
gcgcctgccgcagcgcctgcgccggccaagactgatgacaaacgtgaaggccgcaacgga
cgcgatggcaaccgtcgcaaccagcgcggtgatcgcagcggcgagccacgcaacgaaacc
cgccccgataaccgtggcgagcgttccgaacgcggtaaccgcaacgaacgtggtgaacgc
aacggccgtggtgaacgcgcagagcgccaagaccgtggcaaccgcaatgaacgcggcgag
cgcaacagcgtgccccgtcaggagcgcatggatggcgagcagtccaaagccgtaggcgct
gaaatcagtctgcaagccgacggcgcacccgcaccacaagcgcgcgaaggccgccaggag
cgcggtaaccgcaatgaacgcggcaaccgtggtccccgcaatggcgatcgcaacgacaac
gcaacccgcaacgcagaggtgaatgcggaagcgcctgcagcccaagcttcggcagaaggc
gtggaagcaagcgcggagtcgcaaggtgaagcgcgtgagccacgtgaagggcgtaaccgc
aatggccgtggccgccgaaacgaccgtggcccacgccaggacgaggccaaccgtgtagat
cagcccggcgagttgcccgttgctgaaggtacagacgccgcttcagcagccgacgtaccc
tcagaaggaaccacaggccaggaaccacgcgaacgccgctcccgcgaccgttatggccgc
gaccgtggcaatcgcgggtcgcgtggtgaaaatgggcagcgccagcaggctgacggacag
gaagcctctccggctacctttgacgctgcacctgcaccggagtctgctcccgtagcccca
gttgaggcagtggcacccctagcttcggcatccccggtcgctcctgtagctgcgccggtc
actgtcgccacgactacagctgcttccgtggtggctgctcccgaaggccgcatgcccaaa
gtggtgagctatgcgcttcctactgaagcactggctcaagtggcatccagcgccggcctg
caatgggtgaattcagatgctgacaagattgccgcggttcaggccgccattgctgccgaa
cccaaaccggttcatgtgccccgtgagcgtcccgcccccgtggtgctggatgaccgtccg
ttggttctggtggaaacccgccgcgacttgcgcgacatgaagctgccgtttgaagaaaac
caaacagcctaa
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