Rhodoferax mekongensis: RAN89_09200
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Entry
RAN89_09200 CDS
T10170
Name
(GenBank) 3'-5' exonuclease
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rmk Rhodoferax mekongensis
Pathway
rmk03420
Nucleotide excision repair
rmk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rmk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RAN89_09200
03430 Mismatch repair
RAN89_09200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rmk03400
]
RAN89_09200
Enzymes [BR:
rmk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RAN89_09200
DNA repair and recombination proteins [BR:
rmk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RAN89_09200
MMR (mismatch excision repair)
Other MMR factors
RAN89_09200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_12
AAA_30
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
WNO06586
LinkDB
All DBs
Position
1890521..1892980
Genome browser
AA seq
819 aa
AA seq
DB search
MHSFAAAGSTPLLLHNLNPEQLAAVTLPAEHALILAGAGSGKTRVLTTRIAWLLQNGYVS
PGGILAVTFTNKAAKEMMTRLSAMLPVNVRGMWIGTFHGLCNRFLRAHYKNAGLPQAFQI
LDTQDQLSAIKRLCKQYKIDDERFPPKQMAWFIGNCKEEGLRPKDVVASDPDTRKKIEIY
QLYEDQCQREGVVDFGELMLRSYELLRDNAPIREHYQRRFRHILIDEFQDTNKLQYAWIK
MIAGVGQGGSDGSGGSVLAVGDDDQSIYAFRGARVGNMTDFVREFAVRQQIKLEQNYRSY
SNILDSANALISHNSRRLGKNLRTDQGAGEPVRVYEAPSDFAEAQWMVDEMKQLIRDDVP
RSEIAVLYRSNAQSRVIETGLFNAGIPYRVYGGLRFFERAEIKHALAYLRLLENPNDDTS
FLRVVNFPARGIGARSIEQLQDLARATGCSLHDAVSTLTGRPGAVIAGFVAKLDVMREQT
ADLNLKDIIKLMLEHSGLLEHYRNEREGEDRVENLDELVNAAESFVMQEGFGREAPGMAP
LVSSPEALLSQSPASQGLSGNALETAPDEFGDTGETLSPLQAFLTHAALEAGDNMAAAGQ
DAIQLMTVHSSKGLEFDCVFITGMEEGLFPHENSMSDHDGLEEERRLAYVAITRARKRLY
LSHSQTRMLHGQTRYNLKSRFFDELPEECLKYLTPKQQAMPSGAGMGGGMGGGFGGGGYG
GSGNSWGGSGYATNSGAARAYSTGAGGTFGAYSAPQKEVVRKEEPTGLRKGQKVFHAKFG
EGTVLTLEGAGDDARAQINFPRHGTKWLALSVAKLTPVP
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atgcattcttttgccgccgctggctccactcccctcctgttacacaacctgaaccccgag
cagctggccgctgtgacgctgcccgccgagcacgcgctcattctggcgggggcgggttcc
ggcaaaacgagggtgctcaccacgcgcatcgcgtggctattgcagaacggctacgtgtca
cccggcggcatcttggcggtgaccttcaccaacaaggccgccaaggaaatgatgacgcgg
ctcagtgccatgttgccggtgaatgtgcgcggcatgtggataggcaccttccacggcctg
tgcaaccgcttcctgcgcgcgcattacaagaacgcaggattgccacaggcctttcagatt
ctggacacgcaagatcagctctccgccatcaagcgcttgtgcaagcagtacaagatcgac
gacgagcgctttcctcccaagcagatggcctggttcatcggcaactgcaaggaagaaggt
ctgcgacccaaggacgtggtggccagcgacccggacacgcgcaaaaagattgagatttac
cagctctacgaagaccagtgccagcgcgaaggcgtggtggactttggcgagctgatgctg
cgctcttacgagctgctgcgcgacaacgcgcccatccgcgagcactaccagcggcgcttc
cgccacatcctgattgatgagttccaagacaccaacaagctgcaatacgcctggatcaag
atgatcgctggcgtggggcagggtggcagtgacgggagcggtggctcggtgctggcggtg
ggcgatgacgatcagagcatttacgccttccgcggcgcgcgcgtcggcaatatgaccgac
tttgtgcgcgagttcgcggtgcgccagcagatcaagctggagcagaactaccgcagctac
agcaacatcctggacagcgccaacgcgctcatcagccacaacagccgccgccttggcaaa
aacctgcgcaccgaccagggcgcgggcgagccggtgcgggtgtatgaggcgcccagcgac
tttgccgaagcgcaatggatggtggacgagatgaagcagctcatccgcgacgatgtgccg
cgctcggagattgccgtgctctatcgcagcaacgcgcaaagccgcgtgattgaaaccggg
ctgttcaatgcaggcattccctaccgcgtgtatggcggcctgcgcttttttgagcgcgct
gaaattaagcacgcgctggcgtacctgcgcctcttggagaaccccaacgacgacaccagc
tttctgcgggtcgtgaacttcccggcgcgcggcatcggtgcgcgcagcatcgagcagttg
caagacctggcccgggccaccggctgctcgctgcacgatgccgtgagcacactcactggc
cgccccggcgccgtgatcgccggctttgtggccaagctcgacgtcatgcgcgagcagacc
gccgacctgaacctcaaagacatcatcaagctcatgctggagcacagcggcctgctggag
cactaccgcaacgagcgcgagggcgaagaccgcgttgagaacttggacgaactggtcaac
gccgccgagagctttgtgatgcaagaaggcttcggccgcgaagcccccggcatggcgccg
ctggtcagcagccccgaagctttgttgagccagagccctgccagccaaggcttgagcggc
aatgcgctggaaactgcaccggatgaattcggcgacaccggcgaaaccctctcgcccttg
caagccttcttgacccacgccgcgctcgaagcgggcgacaacatggccgccgccgggcag
gacgccatccagctcatgaccgtgcactccagcaagggtctggaatttgactgcgtgttc
atcaccggcatggaagagggcttgttcccccacgagaactccatgagcgaccacgacggt
ctggaggaagagcgccgcctggcctacgtggccatcacccgcgcgcgcaagcgcctgtac
ctgagccattcgcagacgcgcatgctgcacgggcagacgcgctacaacctcaagagccgc
ttcttcgacgagctgccggaggaatgcctgaagtacctcacacccaagcagcaggccatg
ccctcaggtgccggtatgggtggtggcatgggcggcggttttggtggcggaggctatggc
ggctccggcaacagctggggtggtagtggctatgctacgaattcaggagctgctcgcgca
tattccacgggcgccggaggcacatttggcgcgtattccgccccgcagaaggaagtggtg
cgcaaagaggagcccaccggcctgcgcaaggggcaaaaggtgttccacgccaagttcggc
gagggcaccgtgctcacgctggaaggcgcgggcgacgatgcgcgtgcccagatcaacttc
ccccgccacggcaccaagtggctcgccctgagcgtggccaaactcacgccggtgccctga
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