Rhodoferax mekongensis: RAN89_16210
Help
Entry
RAN89_16210 CDS
T10170
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rmk Rhodoferax mekongensis
Pathway
rmk03410
Base excision repair
rmk03430
Mismatch repair
rmk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rmk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RAN89_16210 (recJ)
03430 Mismatch repair
RAN89_16210 (recJ)
03440 Homologous recombination
RAN89_16210 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rmk03400
]
RAN89_16210 (recJ)
DNA repair and recombination proteins [BR:
rmk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
RAN89_16210 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
RAN89_16210 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RAN89_16210 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
WNO04427
LinkDB
All DBs
Position
3409282..3410991
Genome browser
AA seq
569 aa
AA seq
DB search
MKIVPRDIPPRAAWALEQAGLHPLLARLYAARGVTGKDELDDALGKLLPPQGLLGADRAA
VLLADAIAQDKKLCVVADYDCDGATACAVAVRGLRLLGARHVDYLVPDRVVDGYGLTAPI
SERVKKSGADVLITVDNGIASVDGVARAKALGLQVLVTDHHLPGSELPDADVIVNPNQPG
CTFESKSMAGVGVMFYTLLALRSELRNRGVFDAATQPKLDTLLPLVALGTVADVVKLDAN
NRRLVAQGLKRVRALAMPAGLASLFIAAGRKAEVATTFDFGFALGPRINAAGRLSDMTLG
IECLLTDDSGRADELAKMLDGINRERREIEGDMREQAMMIAESLFDEGDEPPPAICVFDP
DFHEGVVGIVASRIKDKLHRPTFVFAASAAEGKEHELKGSGRSIPGFHLRDALDLVAKRY
PGVILRFGGHAMAAGCTVAEEFFDDFENGMNEVAQEWLDAATLTRRMETDGPLAAEYRRV
DLVDALHKEVWGQGFAAPTFSEEVEVVSQRLVGEKHLALKLKHQGEPVDGIWFGHTEPLP
PKVTLAFRLDADEWNGVRRVRFLVEGAQV
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatagtcccccgcgacattcccccccgcgccgcctgggccctcgagcaagccggc
ctgcacccgctcctggcccgcctgtatgccgcacgcggtgtaaccggcaaagacgagttg
gacgacgccttgggcaaactcctgccgccgcaaggcttgctgggtgccgaccgcgccgcc
gtgctgctggccgatgcgattgcgcaagacaaaaagctctgtgtggtggcggactatgac
tgtgacggtgccaccgcctgtgccgtggccgtgcgcggactgcgcctgctgggcgcccgc
catgtggactatctggtgcccgaccgcgtggtggatggctacggcctgactgcccccatc
agcgaacgggtcaagaaatccggcgccgatgtattgatcaccgtggacaacggcatcgcc
agcgtggacggcgtggcccgtgccaaagcactgggtctgcaagtgctggtcaccgaccac
cacttgcccggtagcgagttgccggatgcggacgtgatcgtcaaccccaaccagccgggc
tgcacgtttgagagcaagtccatggccggggtgggcgtcatgttctacaccctgctggcg
ctgcgctccgagctgcgcaaccgcggcgtgtttgatgccgccacacaacccaagctggac
accctgctgcctttggtggcgctgggtacggtggccgatgtggtcaagctcgatgccaac
aaccgccgcctcgtagcccaagggctcaaacgggtgcgggcgctcgccatgcctgcggga
ctagctagcctttttatagcagcgggacgcaaagcggaagtggccaccaccttcgatttc
ggctttgcactggggccgcgcatcaatgccgccggccgcttgagcgatatgaccctgggc
atcgaatgcctgctgacggacgactctgggcgcgctgatgaactggccaagatgctggac
ggcatcaaccgtgagcgccgcgagattgaaggcgacatgcgcgaacaggccatgatgatt
gcggagagcctgttcgacgaaggcgatgagcctccacctgccatttgcgtgttcgacccc
gacttccacgaaggcgtggtgggcattgtggccagccgcatcaaggacaagttgcaccgc
cccacgttcgtatttgctgccagcgccgccgaaggcaaagagcacgaactcaagggctcc
gggcgcagcattcccggcttccatttgcgtgacgcgctggacctggtggccaagcgctac
cccggcgtcatcctgcgcttcggtggccacgccatggcggcaggctgcacggtggcggaa
gagttttttgacgattttgagaacggcatgaacgaggtggcccaggaatggctggacgcc
gccacgctgacccgccgcatggaaaccgatggccccttggctgccgaataccgccgcgtg
gatctggtggacgccttgcacaaagaggtgtggggccagggctttgccgctcccaccttc
agcgaagaggtggaggtcgtctcccagcgcctggtgggtgaaaagcacctcgcgctcaaa
ctcaagcaccagggcgagccggtggacggcatctggttcgggcacaccgagccgctgccc
cccaaggtcacattggctttccgcctggacgccgacgagtggaacggcgtgcgtcgcgtg
cgctttctggtcgaaggggcgcaggtgtga
DBGET
integrated database retrieval system
