Rhodoferax mekongensis: RAN89_16910
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Entry
RAN89_16910 CDS
T10170
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rmk Rhodoferax mekongensis
Pathway
rmk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rmk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RAN89_16910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmk03019
]
RAN89_16910
Enzymes [BR:
rmk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RAN89_16910
Messenger RNA biogenesis [BR:
rmk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RAN89_16910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SGP
Motif
Other DBs
NCBI-ProteinID:
WNO06759
UniProt:
A0ABZ0B520
LinkDB
All DBs
Position
complement(3543197..3544696)
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AA seq
499 aa
AA seq
DB search
MAFAQLQLANPLARAVAEMGYTTMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFALPLL
QRLIKHENASTSPARHPVRALVLLPTRELADQVAQQVKLYAKYTNLRSAVVFGGMDMKPQ
TLELKAGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLP
KTRTTLLFSATFSPEIKRLASSYLQNPITIEVARSNATASTVEQHFYRVNDDDKRHALLQ
IVRSKDIKQAFVFVNSKLGCARLTRALERDGLRAAALHGDKSQDERLKALEAFKKGEVDL
LVCTDVAARGLDIKDVPAVFNMDIPFNAEDYVHRIGRTGRAGASGLAVSFVGGGNDARLV
ADIEKLIKTKIELEAVEFDEDRPDIRSQGRINDGRRMYAENGEQARGPRSEGRGDSRGEG
RGRSHSNERDDAYRTRAPREYSRPAPAPRDPFFDKPYEPSAPAAEAPAPSWESAAKPSSR
GISANIKPKRKVAALFKSA
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atggcttttgcccagctgcagctggccaatcctctcgcccgcgcagtggcggagatgggc
tacaccaccatgacgcctattcaggcgcaggccatccctgtcgtgctgaccgggaaagac
gtgatgggcgccgcccagaccggtaccggcaaaactgccgcattcgcactgcctttgctg
cagcgcctgataaagcacgaaaacgcttccacctctcccgcccgccaccccgtacgcgct
ttggtgctgttgccaacccgcgagctggctgaccaagtggctcagcaagtcaagctgtac
gccaagtacaccaacctgcgcagcgcggtggtgttcggtggcatggacatgaagccccag
accctggagctcaaagccggtgtggaagtgctggtggcgacccccggccgtttgctggac
cacatcgaagccaagaacgcggtgttgaaccaggtcgagtacgtggtactggacgaagcc
gaccgcatgctggacatcggcttcctgccggacctgcaacgcatcctgagctatctgccc
aagacgcggaccaccttgctgttctcggcgaccttttcgcccgaaatcaagcgactggcg
agcagctacctgcaaaacccgatcacgattgaagtggcgcgctccaacgccacagcttcc
accgtggagcagcatttctaccgcgtcaacgacgacgacaagcgccacgcccttttgcag
atcgtgcgcagcaaagacatcaagcaagcctttgtgtttgtgaacagcaagctcggttgc
gcccgcctgacccgtgccctggagcgcgatggtctgcgtgctgcggccctgcacggcgac
aagagccaggacgagcgtctgaaagcactggaagccttcaaaaaaggcgaagtggacttg
ctggtctgtaccgatgtggccgcccgcggtttggacatcaaggacgtgcccgccgtgttc
aacatggatattccgttcaacgcagaagactatgtgcaccgcatcggccgtaccggtcgc
gccggcgcctccggcctggcggtgagctttgtcggtggcggcaacgatgcccgcttggtg
gcggacatcgagaagctgatcaagaccaagattgagctcgaagccgtggagtttgacgaa
gaccgtccggacatccgcagccaaggccgcatcaatgatggccgccgcatgtacgccgag
aacggcgagcaagcccggggtccccgcagcgaaggccgtggagacagtcgcggtgaaggc
cgtggccgcagccatagcaatgagcgcgatgacgcctaccgcacccgcgcaccccgcgaa
tacagtcgtcccgctcctgcgccgcgtgatcccttctttgacaagccctacgagcccagc
gcccctgcggctgaagcacctgctccttcttgggagtctgcggccaaaccttccagccgc
ggcatctctgccaacatcaagcccaagcgcaaggtcgcggcactgttcaagtccgcctga
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