Roseimaritima multifibrata: FF011L_08450
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Entry
FF011L_08450 CDS
T07409
Symbol
hrpB_1
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
rml
Roseimaritima multifibrata
Brite
KEGG Orthology (KO) [BR:
rml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rml03019
]
FF011L_08450 (hrpB_1)
Enzymes [BR:
rml01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FF011L_08450 (hrpB_1)
Messenger RNA biogenesis [BR:
rml03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FF011L_08450 (hrpB_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_23
AAA_19
nSTAND3
T2SSE
FtsK_SpoIIIE
AAA_29
Motif
Other DBs
NCBI-ProteinID:
QDS92109
UniProt:
A0A517MB44
LinkDB
All DBs
Position
1057299..1061435
Genome browser
AA seq
1378 aa
AA seq
DB search
MKPESPYSPPFSQTMQVDRHRLRKAWQRIEQTGSQDQASESARQRFQEQLDASIAVRQQR
EQLKPSLETPAELPISGYRDQVIQLLKERQVIVVCGETGSGKSTQLPKFCLDAGFGRKAM
IGHTQPRRLAARSIAARLGDELACPSSVGFKIRFTDATESNTLVKLMTDGILLAETQHDR
FLDRYDVIIIDEAHERSLNIDFLLGYLRRLQGKRPDLRIIITSATIDAERFAEHFSDESG
PAPILTVEGRGYPVQMRYLPWDEVAASTDDGMSPTYDLSRHVIAGVDEVLRDGGGDALVF
LPTERDIREVSHRLNGHFKRQGREGRIDLLPLYARLPQKEQQQIFNPSGSKRRIVLATNV
AESSLTVPRIHYVVDAGTARISRYSPRSKVQRLPIEAISQASANQRAGRCGRIGPGVCVR
LYSEQDFADRPAFTTPEIRRTNLASVILQTKTLNLGPISEFPFLDPPRPESIREGLKTLH
EIGAIDRREELTKIGMQLGRMPVDPRVGRMLLAAEEHGVLPEVLVIAAAIEIQDPRERPI
EKQQAADEAQAIFQDGQSDFVSYLRLWHFYQEQREALSRNRLQKACRSRFLSYNRLREWE
DVYRQLREMIRGVHRPSPGQSRGKRSSGGGKLASIGPPRLLEPDDNASEEPAAQPVLSEE
RYDAVHQALLTGLLSGVAQKTDKHMYLGAGGLKLQLWPGSGLFELAPQWIVAAELVETTR
TYARTVARIKPEWLEQLAEHLVRRSYSEPHWSKKQGGAFCYERVNLFGLPVVLRRRVALA
PIDPTTARELLIEQGLVEQQLPTRSRSVTHNRRLMEWIDQWMAKARQREFVVDPLTIHQF
YAMRLPANVVDRVSLERLDRDQPIPDWVRSLKSPEDLQAWLEAPPEIENVEGQEGPDTLA
TLYMAPHDLLPQVAATIAPDQFPDMLDVGGTQLPIDYHYEPGSPRDGITVTVPKAALAQV
SDHRFGWLVPGLLETKVTAMIKSLPKRIRRNLVPAADVAREVCAELSPDFGAVPFLPTLC
ATLSRRAEMPISEGDFNSEKLPQHLQILVNVVDEEGQTIASERSVAEVRTHLGVEESSSS
ESLVQAVTTAQIDREGMQTFDLESIEEQVIRTQGGVQLAQFPALVDDVDSVSLRLFSDRL
TAEAAHRRGLMRLYAIAERKEIRSQVRWLPGADKAKVRLGRILPADQYEPALIDLVARMA
FVDQGPLVRSEAEFNERRKNRGERIAVAAQQVAKWLPAWADAYQQARSEWESIGQARYAD
VRQDVHEQVEWLTGDHFLSRTPWQWLQHYPRYFNAIAYRLDKFRSGGESRDREATATVSR
LLTQIENYQPGSGAPGRPAKATKETLRWLIQELRVSLFAQPLGTAEKVSVPRIEKYLN
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atgaagcccgaatcgccttattcgccacccttttcgcaaaccatgcaggtcgatcgccat
cggcttcgcaaggcgtggcaacgcatcgaacaaaccggttcccaggaccaggcatccgag
tcagcgcggcagcgtttccaggagcaattggatgcttcgatcgccgttcgccaacaacgc
gaacagttaaaaccgtcgctggaaacgcctgcggagctaccgatcagtgggtaccgcgat
caggtcattcagttgctgaaagagcggcaggtgatcgtggtctgcggagaaacaggcagc
gggaaaagtacgcagctgccgaaattctgtctggacgctgggtttggacgcaaagcgatg
atcgggcacacccagccccggcggctggcagcacgatcgatcgcagcccggttgggcgat
gaactggcctgcccttcgtcggtcggatttaaaattcgattcaccgacgccaccgaatcg
aacaccttggtcaaattaatgaccgatggaatcctgctggcagagactcagcatgatcgg
ttcttggatcgctacgatgtgatcattatcgatgaagcgcatgagcgttcgctgaatatc
gattttttgttggggtacctgcggcgtctgcaagggaagcgtcccgacctgcggatcatt
atcaccagtgccacgatcgatgccgagcggttcgccgagcatttctctgatgaatccggc
cccgcgccgatcttgacggtggaaggccgtggttacccggtgcagatgcggtacctgcct
tgggacgaagtcgccgccagtaccgatgacggaatgtcgccgacctatgatctttcgcgt
cacgtgatcgcgggagtggacgaggttcttcgcgacggtggaggggacgcgttggtgttc
ctgccgaccgaacgcgacatccgtgaggtttctcatcgtttaaacggacattttaagcga
cagggacgtgaggggcggatcgacttgctgccgctgtatgcgcgattgcctcagaaagaa
caacagcagatcttcaacccctcaggatcgaagcgacggatcgtgttggcgaccaatgtc
gcggaatcgtctttgacggtcccacgcatccattacgtcgtcgatgcgggaaccgcccga
atcagtcgatacagtccacgcagtaaagttcagcggttgccgatcgaggcgatcagtcag
gcgagtgccaatcagcgtgccggacgttgtggacggattggaccaggggtttgcgttcgc
ttgtacagcgaacaagatttcgccgatcgtcctgcttttacgactcctgaaattcgccgc
accaatctggcttcggtcattcttcagaccaagacattgaacctgggcccgatcagcgaa
tttccgtttctggatccgccgcgaccggaatcgattcgggaggggctgaaaacactgcat
gaaatcggagcgatcgaccgccgcgaagaattaaccaagatcgggatgcagttgggacgg
atgcccgtcgatcctcgcgtgggccgaatgctgcttgccgcagaggaacatggcgtgttg
cccgaggtcctggtgatcgccgcggcgattgaaatccaggatccgcgtgaacggccgatc
gaaaaacagcaggccgctgacgaagcgcaggcgatctttcaggatggtcaaagcgacttt
gttagctatctccgcttgtggcatttttatcaggaacaacgcgaggcgctctctcggaat
cggctgcaaaaggcctgccgaagtcgattcctctcctacaatcgcctccgagagtgggaa
gacgtctatcgacagttgcgtgaaatgattcgcggtgtccatcgtccttcgcccgggcaa
tcgcgtgggaaacgctcgtcgggtggcggcaagcttgcttccatcgggccgccacggttg
ttggaaccggatgacaatgcaagcgaagaaccggctgcccagccggtgctgagtgaagaa
cgttacgacgccgttcaccaagcacttctgacggggctgttgtccggcgtcgctcagaaa
accgacaagcacatgtatctgggagccgggggactaaagttgcagttatggcctgggtcc
gggctgttcgaattggcgccgcagtggatcgtggccgccgagctggtcgaaacgacgcga
acctatgcccgtactgttgccagaattaagccagaatggctagagcaactggccgaacat
ctggtgcgtcgcagttacagtgaaccgcactggagcaaaaagcagggaggagccttttgt
tatgaacgggtcaatctgtttggattgccggtcgtgcttcgtcgccgcgtcgccctggca
ccgatcgaccccaccaccgctagggaattgttgattgaacaagggttggtcgaacagcag
ttgcccacccgttcgcgatccgtcacccacaaccggcgattgatggaatggatcgatcag
tggatggccaaagcgaggcagcgggagtttgttgtcgacccactgaccattcatcaattt
tacgcgatgcgtttaccggcgaatgttgtcgatcgagtttcgctggagcgactggaccga
gaccaaccgattcctgattgggtccgttcgctgaaatcgccagaggacctccaagcctgg
ctggaagcgcctccggaaatcgaaaacgtcgagggacaagaggggcccgataccctagcg
accctctacatggctccgcacgacctgttgccgcaagtcgctgccacgattgctcccgat
cagtttcccgacatgttggatgttggcggaacccagttgccaatcgattatcactacgaa
ccaggatcgccacgcgatgggatcacggtaacggttcccaaggctgcgcttgctcaggtt
tccgatcatcgatttggttggttggtccccggtctgctggagacgaaggttacggcgatg
atcaagtcgctgccaaaacgaattcgccgaaacctggttccggcggcggatgtggctcgc
gaagtctgtgcggaattgtcccctgatttcggagcggtcccttttctcccgacgttatgt
gcaaccctttcacggcgcgcggaaatgcctattagcgagggggactttaattccgaaaag
ctccctcagcacttgcagattttggtgaatgtggtcgatgaagaggggcaaacgatcgct
agtgaacggagtgtggctgaggttcgaacgcatctgggcgttgaagaatcctcctcttcc
gaatcgttggtgcaggccgtgacaacggctcagatcgatcgcgaagggatgcagactttc
gatctggagtcgattgaagaacaagtgattcggacgcagggaggtgtgcaattagcacaa
ttccccgccttggttgacgatgttgattcggtttcactgcgactgttttccgatcgtcta
accgccgaagcggctcatcgccgtggtttaatgcggttgtatgccattgccgaacggaag
gagattcgcagccaagtgcgctggttgcccggtgccgataaagcaaaggtgcgactgggc
aggatcctgccagccgatcagtatgagccagcgctgattgatttggttgcccggatggcg
tttgtcgatcaggggccgctggtccgcagcgaggcggaattcaatgaacgtcgcaagaat
cgcggcgaacggatcgccgtcgcagcccaacaggtcgccaagtggttgcccgcttgggcc
gacgcctatcagcaagcgcgaagcgaatgggaatcgatcgggcaagcacgttatgccgac
gtccgccaagacgtccacgagcaagtcgaatggctgaccggcgaccactttctttcgagg
acgccctggcagtggttgcagcactacccaagatatttcaacgcgattgcctaccgtctg
gataaattccgttcgggcggagagagtcgtgacagggaagcgacggcaacggtttcacgc
ttgttgacgcaaatcgaaaactatcaacccggctcgggggctcccggacgcccggccaaa
gcgaccaaagaaaccttgcgttggttaatccaagaactgcgagtcagtctgtttgcacag
ccgctgggaaccgccgagaaagtctcggtccctaggatcgagaagtacttgaattga
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