Roseimaritima multifibrata: FF011L_09590
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Entry
FF011L_09590 CDS
T07409
Symbol
yjcD
Name
(GenBank) Putative ATP-dependent DNA helicase YjcD
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
rml
Roseimaritima multifibrata
Brite
KEGG Orthology (KO) [BR:
rml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rml03400
]
FF011L_09590 (yjcD)
Enzymes [BR:
rml01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FF011L_09590 (yjcD)
DNA repair and recombination proteins [BR:
rml03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
FF011L_09590 (yjcD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Motif
Other DBs
NCBI-ProteinID:
QDS92222
UniProt:
A0A517MBF4
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Position
1212879..1215602
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AA seq
907 aa
AA seq
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MNDPSSQQIQFDFDSGPAEKAPAWDLPSYAIPEQTLPALLVRASAGTGKTYRLTGRLLHL
LLQGAPIESLLATTFTRKAAGEILERLLSTLASAADDRTDKSLLALQQQIGRTDVTRQQC
TRLLHAIIREIHRLRIGTLDSLFSQLARSFPFELGLPPGWRLTDENEERWLRSRAIHAML
SESDLAEVTSLLAMLTKGEIKRSIAREIEMVIVDTYAVARGCSLAAWEKLQTPSAPENQT
LTESAGLLLTAQVGHKSADKQLHAIGELMESREIAELAGKPLPATVKGLVERDEPVTYYK
RDLPESIVSALLAAYDWSRSHTLGLLSEQSQATGRILQDYDHHIHALKQSTRALAFDDVA
QRLSEWIDKEDLATIAYRLDGAIEHVLLDEFQDTSPQQWKVLRPLAYRAALESQKQLASP
DDKRLKNGRPVAPTFFCVGDTKQAIYSWRGGVAAIFDSVAEQIPGVTQDEMSISYRSSPV
ITDAVTQIFQNLSRHPLCQNAGSIASDPADASAYEADAIQRFNNAFPDHESAGKSLPGYV
CLQTGPEHDGPADEKSIVLQSYVAAKVAELAESMPGRSIGILTRKNATVARLIYLLRARG
VEVSQEGGNPLVDSGSVELLLSALMLSEHPGDGRWWYHVRNSPLAQHEVFRPHAEAAEKL
AAGNPNPQDWSHQASIALTAQQAGSSVRRWIEHRGLVVALRELAKPIAEVSEASDQLRMR
QLLQLAQQFERNPQPRLSDFVDQVRQQRVERPQPAQVRVMTVHQAKGLEFDAVVLPELEY
ALGASGVRCVARRPSPTDPPEAMLRYLGKASWRLLPEAWQRAFGAMAAGSVTETLCLLYV
SVTRPRHGLYMFVAPTPSRTATSQANAKMLLYNALQCDAKPADGETVWFETGDPLWYQTD
PAGSEDK
NT seq
2724 nt
NT seq
+upstream
nt +downstream
nt
atgaacgatccttcttcacagcaaatccagtttgattttgacagtggcccagcggaaaaa
gcccccgcgtgggacttgccatcctacgcgattcccgagcaaacgctcccggccctgttg
gtccgggcctcggcaggaacaggaaaaacttaccgtctgacgggccgactgctgcatttg
ctgttgcagggggctccgatcgaaagcctgcttgctacgacgttcacccggaaagccgcg
ggtgaaattctagagcgtctgttgtcgactttggcgtccgcggccgatgatcgtacggat
aaatcgttgctggcgttgcagcagcagatcgggcgaaccgacgtgacgcggcagcaatgc
acgcgactgttgcatgcgatcattcgagaaattcaccgcttgcgtatcgggaccttggac
agcctgttttcgcagttggcgcgttcctttccctttgagcttggcttgccaccaggctgg
cgattgacggacgagaacgaggaacgttggcttcgcagtcgagcaatccatgcgatgtta
tcggaatccgatttggcggaagttacctcgctattggcgatgctaaccaagggcgaaatc
aagcgttccatcgcccgtgaaattgaaatggtgattgtcgatacgtatgccgtggcgcgt
ggttgttcgctcgctgcgtgggagaaactgcagacgccgtccgccccagagaatcaaacg
ctcaccgaatcagcgggcttgttgttaaccgcccaagtcggacacaaatccgccgataag
caattgcatgcgatcggtgaattgatggaaagccgtgaaatcgccgaattggctggcaaa
ccgctgcccgccaccgtcaaagggttggtggaacgggatgaaccggtcacctattacaaa
cgggatttgcccgaatcgattgtcagtgcgcttctggcagcctatgactggagtcgttcg
catacgctggggttgctctcagagcaatcgcaggcgaccgggcgtatcctgcaagattat
gaccatcatatccatgcgttaaaacaatcgactcgagcccttgcgtttgatgacgtggca
cagcgattgtcggaatggatcgacaaagaagacctcgcgacgattgcctatcggttggat
ggtgcgattgaacatgtgctgttggatgaattccaagatacctctccacagcagtggaaa
gtcctccgtccgttggcttatcgagcggcccttgaatctcaaaaacaactcgcttctccg
gacgataaacgactgaaaaatgggcgtccggtcgctccgacttttttctgtgtcggagat
accaagcaggcgatttacagttggcgtggcggggtcgcggcgatctttgattcggtcgcc
gagcagatccccggagtcacgcaagatgaaatgtcgatcagctaccgcagtagcccggtc
attaccgatgccgtgactcagatttttcaaaatctgtctcgacatccgctctgtcaaaac
gctggcagtattgcctcggatcctgccgacgcatccgcttacgaagccgatgcgattcag
cgttttaataatgcctttccggatcacgaatccgcgggtaaatcattgcccggttacgtc
tgcctgcagaccggtccggaacacgatggtccagccgacgagaagtcaatcgttttgcag
tcctatgtggcggcaaaggttgcggaacttgccgagagtatgccaggccgttcgattggg
atcctgacgcgcaagaacgcgacggtcgctcggttgatttatttgcttcgtgcccgcggc
gttgaagtcagtcaggaaggggggaaccctcttgtcgattccggttcggttgaactgctt
ctttcggcattgatgttgtcggagcacccgggggatggacgttggtggtaccacgttcgc
aattcaccacttgcccagcacgaggtttttcggccgcacgcggaggctgccgaaaaattg
gctgctggcaatccaaatccacaggattggtctcaccaggccagcatcgccctgaccgca
caacaagccggttcatcggtacgccgatggatcgagcatcgcgggttggtggtcgcactt
cgtgaattagcgaaaccgattgcggaagtttccgaggcatccgatcagttgcggatgcgg
cagttgctgcagttggcccagcagtttgaacgcaacccgcagccacgcctgagcgatttt
gtcgaccaggttcgccaacaacgcgttgaacgcccgcaaccagctcaggttcgtgtgatg
acggttcatcaagcgaaagggctggaatttgatgcggtcgtattgccggaactggaatac
gcgttgggggcgagtggcgtccgctgcgtcgctcgacgtccttcgccgacggatcctccg
gaagcgatgttgcggtacttggggaaagcctcttggcgattgctgcccgaagcatggcag
cgagcctttggagcaatggctgcaggaagtgtcaccgaaacgttgtgcttgctgtatgtg
tcggtaacccggccgcggcatgggttgtacatgtttgtggccccgacccccagccggact
gcgacgtctcaagcaaatgctaaaatgttgctttacaacgctttgcagtgcgatgccaag
ccagccgatggcgaaaccgtttggtttgaaaccggggaccctctctggtatcagacggat
ccggccggttccgaagacaagtga
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