Roseimaritima multifibrata: FF011L_41880
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Entry
FF011L_41880 CDS
T07409
Symbol
hup
Name
(GenBank) DNA-binding protein HU
KO
K05788
integration host factor subunit beta
Organism
rml
Roseimaritima multifibrata
Brite
KEGG Orthology (KO) [BR:
rml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rml03032
]
FF011L_41880 (hup)
03036 Chromosome and associated proteins [BR:
rml03036
]
FF011L_41880 (hup)
03400 DNA repair and recombination proteins [BR:
rml03400
]
FF011L_41880 (hup)
DNA replication proteins [BR:
rml03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
FF011L_41880 (hup)
Chromosome and associated proteins [BR:
rml03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
FF011L_41880 (hup)
DNA repair and recombination proteins [BR:
rml03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
FF011L_41880 (hup)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
DUF7690
HU-CCDC81_bac_2
HU-CCDC81_euk_2
DUF4011
Motif
Other DBs
NCBI-ProteinID:
QDS95392
UniProt:
A0A517MKH4
LinkDB
All DBs
Position
complement(5395558..5395917)
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AA seq
119 aa
AA seq
DB search
MTKKDIVRTISEEVGLTQQQTKVIVQKTFDGIVDTLVRERRIELRNFGVFEVKKRAARKA
RNPRTGHQVEVAEKYVVTFKPGKEMEQRVRDLAEAADLLAAKESEITKSTPFPNPPEST
NT seq
360 nt
NT seq
+upstream
nt +downstream
nt
gtgacaaaaaaagatatcgtccgtacgatttccgaagaggttgggctgacccaacaacaa
acgaaggtgattgtccaaaagacctttgacggaatcgtcgacacattggtccgagagcga
aggattgaactgcgtaattttggagtcttcgaggttaagaagcgggcggctcgcaaagcc
agaaacccgcggacaggccatcaagtcgaagtcgctgaaaagtacgtggtcaccttcaaa
cccggcaaggaaatggaacaacgagttcgtgatttagccgaagcagcggacctcttggcc
gctaaagaaagcgaaatcacgaaatcgaccccgttccccaatccccccgaatcaacttag
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