Roseovarius mucosus: ROSMUCSMR3_00698
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Entry
ROSMUCSMR3_00698 CDS
T04779
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rmm
Roseovarius mucosus
Pathway
rmm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rmm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ROSMUCSMR3_00698 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmm03019
]
ROSMUCSMR3_00698 (rhlE)
Enzymes [BR:
rmm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ROSMUCSMR3_00698 (rhlE)
Messenger RNA biogenesis [BR:
rmm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ROSMUCSMR3_00698 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Utp25_C
AAA_19
HEM4
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ARE82199
UniProt:
A0A1V0RKA1
LinkDB
All DBs
Position
complement(713839..715146)
Genome browser
AA seq
435 aa
AA seq
DB search
MNLFDEMGLPAALVRKLANEGITEPTPIQTHAIPHALNGFDVLGLAQTGTGKTMAFGLPL
ITALMQAPGKPAPKTIRSLILAPTRELASQIRDALLPLVKDSPIKINLVVGGASINPQIK
RLEQGTDILVATPGRLLDLIDRRAVRLDAAHFLVLDEADQMLDLGFIHALRRIAGLLAAE
RQTMLFSATMPKQMEELAGSYLKHPKRVQVSPPGKAADKVTQEVHFVAKAAKPDLLIELL
AKHKSELALVFGRTKHGSDKLAKRLEQAGYSVAAIHGNKSQGQRERALKSFRDGHVKILV
ATDVAARGLDIPDVKHVYNYELPNVPDNYVHRIGRTARAGRDGAAIAFCAPDEMGELKDI
QKVLGTTIPVASGRPWEVLPDPKSPKPATGRGGPRRRTGGGGGFSGGGQQGKPGAGGGRR
RKPGGGGGGARSNAA
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
ttgaacctatttgacgaaatgggcctgcctgctgcattggtgcgcaagctggccaacgaa
ggcatcaccgaaccgaccccgatccagacccatgcgatcccgcatgcgctgaacgggttt
gatgttctgggccttgcgcagaccggcaccggcaagaccatggcctttggcctgcctctg
attacggcgttgatgcaggcaccgggcaagcccgcgcccaagaccatccgcagcctgatc
cttgcaccgacgcgggaattggccagccagatccgtgacgcgctgttgccgctggtcaag
gacagcccgatcaagatcaatcttgtggtggggggggcctcgatcaatccgcagatcaag
cggttggagcagggcactgatattctggtggcgacgccggggcggttgcttgaccttatt
gaccggcgcgcggtgcgtctggatgcggcgcatttccttgtgctcgatgaggccgatcag
atgcttgatctgggctttatccatgcgctgcgccggattgcggggcttttggcggcggag
cgtcagacgatgctgttttcggccaccatgcccaagcagatggaagagttggccggtagc
tatctcaagcatcccaagcgggtgcaggtcagcccgccgggcaaggccgctgacaaggtc
acgcaagaggtgcattttgttgccaaggccgccaagcccgatctgctgatcgagcttttg
gccaagcacaaaagcgaattggcgttggtctttggtcgtaccaagcacggctcggacaag
ttggccaagcggttggagcaggccggttacagcgtggcggcaatccatggtaacaagagc
caaggccagcgcgagcgcgcgctcaagtcgttccgtgacgggcatgtcaaaatccttgtg
gcgaccgatgtggcggcgcggggtctggatattccggatgtcaaacacgtctataattac
gaattgccgaatgtgcctgacaactatgttcaccggatcggacggaccgcgcgggcgggc
cgggacggggcggcgattgcattctgcgcgcccgacgagatgggcgagttgaaggatatt
caaaaggttctgggcacgacgattcccgttgcctcgggccgtccgtgggaagtgctgcct
gatccgaagtcgcccaagcccgccacggggcggggtggtccgcggcgtcgcacaggcggc
ggtggcggattttccggcggtggccagcagggcaagccgggcgcgggcggtggtcgtcgg
cgcaagcccggtggcggcggtggcggcgcgcggtcgaacgcagcctga
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