Roseovarius mucosus: ROSMUCSMR3_02603
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Entry
ROSMUCSMR3_02603 CDS
T04779
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
rmm
Roseovarius mucosus
Pathway
rmm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rmm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ROSMUCSMR3_02603 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmm03019
]
ROSMUCSMR3_02603 (rnr)
03016 Transfer RNA biogenesis [BR:
rmm03016
]
ROSMUCSMR3_02603 (rnr)
Enzymes [BR:
rmm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ROSMUCSMR3_02603 (rnr)
Messenger RNA biogenesis [BR:
rmm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ROSMUCSMR3_02603 (rnr)
Transfer RNA biogenesis [BR:
rmm03016
]
Prokaryotic type
tRNA degradation factors
ROSMUCSMR3_02603 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
MarR
TPR_21
Motif
Other DBs
NCBI-ProteinID:
ARE84072
UniProt:
A0A1V0RR28
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All DBs
Position
2678508..2680763
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AA seq
751 aa
AA seq
DB search
MSQMPSKVEILQWISDNPTLTAKRDIAKAFGIKGAARIDLKRLLKELEDEGHLEKRKKSY
RDPDRLPPVSVLQITGQASDGELLARPLEWTGEGIEPVVLLIPRASDPAMGVGDRILARL
QEVKGESHHYEARLIRRIGTNPRKVLGIFRKGAEGGRILPIDKGDGKEWHVAADATGGAQ
DGELVEAEQAGPAGRMGLPRARVLDRLGDPSAPKAVSLIAIHQHGIPDSFPDAVIAEADA
MKPAGLKGREDMRDMPLITIDPWDARDHDDAVWAHADDDPKNEGGHVIWVAIADVAHYVR
PGTALDHEARKRGNSSYFPDRVVPMLPDRLSGDLCSLHEGVPRACIAVRMQITATGEKIG
HRFVRGLMRSAASLTYQQVQSAQDGAPDDKCAPLMDEVITPLYAAYAALEEARRRRQPLD
LDLPERKVVLSDAGKVLSVNFTERLEAHKLIEECMVLANVAAAETLVARKSALLFRVHEE
PSPEKLDALREVAATAGMVLAKGQVLKTAHLNALLHAARDTDHSEVINMSTLRAMTQAYY
APQNFGHFGLALQAYAHFTSPIRRYSDLVVHRALISAHGWGKDGLSHEEEAQLEETAQHI
SDTERRSMMAERDTNDRYLAAFLSERLGEEFTGRISGVVKFGVFVKLDETGADGLIPVRS
LGREYFHFDREASTLMGSDTGLTIGLGQRVTVKLAEAAPVTGGIALELVSLDGETLPKGP
RATRGKPPKRKLGSAKRKATVERRKAERKRR
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atgagccagatgcccagcaaggtcgaaatcctgcaatggatttcggacaacccgaccctc
accgcgaaacgcgatatcgccaaggcctttggcatcaagggggctgcgcggatcgacctc
aagcgcctgctcaaggagctcgaggacgaaggccatctggaaaagcgcaagaaatcctat
cgtgaccctgaccggctgccacctgtaagcgtgttgcagatcacggggcaggcctctgac
ggagaactgcttgcgcggcccttggaatggacgggtgagggaatagagcctgtcgtgctt
cttattccgcgcgcctctgaccccgcgatgggggtaggcgaccgcatcctggcgcgtctg
caagaggtcaagggcgaaagccatcactatgaggcgcggttgattcgccgtatcggcacc
aacccgcgaaaagtgctgggaattttccgcaaaggggcagagggcgggcgcatcctgcct
atcgacaagggcgacggcaaggaatggcacgtggccgcggatgccacaggcggcgcccag
gatggcgagcttgtcgaggcggaacaggcgggtcctgcgggccgcatgggcctgccgcgc
gcgcgggttctggaccggttgggcgatccctcggcacccaaggcagtttcgcttatcgct
atccatcagcacggaatccccgacagctttcccgatgccgtgattgcagaggcggatgcg
atgaaacctgcgggcctcaagggccgtgaggatatgcgtgatatgccgctgatcacgatt
gatccttgggatgcgcgcgaccatgacgatgcggtctgggcccatgccgatgatgatccc
aagaacgaaggggggcatgtgatctgggtggcgattgccgatgtggcgcattacgtgcgc
cccggcacggcgcttgaccacgaggcgcgcaagcgcggcaattcgagctatttccctgat
cgcgttgtgccgatgctacccgaccgcctatctggtgatttgtgttcgctgcatgagggt
gtgccacgcgcctgtatcgcggtgcggatgcagatcaccgcgaccggtgaaaagatcggg
catcggtttgtgcgcggtcttatgcgctctgctgcgtcgctgacgtatcaacaggttcag
tcggcgcaggatggtgcgccggatgacaaatgcgcgcccctgatggacgaggtgattaca
ccgctctatgccgcctatgccgcattagaggaggcgcggcgtcgtcgtcagccgctcgac
ctcgacctgcccgagcgcaaggtggtcctgagtgacgcgggcaaggttttgtcggtgaat
ttcaccgagcgactggaggcccataagctgatcgaggaatgtatggtgttggccaatgtg
gccgccgccgaaacgctggtggcgcgcaaatcggcgcttttgttccgggtgcatgaggaa
ccaagccccgaaaaacttgatgccctgcgcgaggtagcggcgacggcggggatggtgctt
gccaagggtcaggtgctgaaaaccgcacatcttaacgcgctgctgcatgcagcgcgcgat
acggatcattccgaggtgatcaacatgtccaccctgcgcgcgatgacgcaggcctattat
gcgccgcaaaacttcggacatttcggccttgcacttcaggcctatgcgcatttcacctcg
cccattcggcgctattccgatcttgtggtccatcgggcgctgatttcggcgcatggctgg
ggcaaagatggtctgagccatgaggaagaagcgcagcttgaggagacggcgcagcatatt
tccgacaccgagcgccgctcgatgatggccgagcgtgacaccaatgatcgctatctggcg
gcgtttctgtcggagcgattgggtgaggaattcaccgggcgtatcagcggcgtcgtcaaa
ttcggcgtgttcgtgaaactggatgaaaccggggcggatgggttgatcccggtccgctca
ttgggccgggaatatttccacttcgaccgcgaagcaagcacgctgatggggtccgatacc
gggcttacgattggcttggggcagcgcgtgacggtcaagctggccgaggccgcgcccgtg
acaggtggcattgcgcttgaactggttagccttgatggcgagaccctgcccaaaggcccg
cgcgccacacgcggcaagccgcccaaacgcaagcttggcagcgccaagcgcaaggcgacg
gtcgagaggcgcaaggccgagcgcaagcgtcggtag
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