Roseovarius mucosus: ROSMUCSMR3_03775
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Entry
ROSMUCSMR3_03775 CDS
T04779
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rmm
Roseovarius mucosus
Pathway
rmm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rmm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ROSMUCSMR3_03775 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmm03019
]
ROSMUCSMR3_03775 (deaD)
03009 Ribosome biogenesis [BR:
rmm03009
]
ROSMUCSMR3_03775 (deaD)
Enzymes [BR:
rmm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ROSMUCSMR3_03775 (deaD)
Messenger RNA biogenesis [BR:
rmm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ROSMUCSMR3_03775 (deaD)
Ribosome biogenesis [BR:
rmm03009
]
Prokaryotic type
rRNA helicases
ROSMUCSMR3_03775 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
ARE85225
UniProt:
A0A1V0RUA0
LinkDB
All DBs
Position
complement(3887381..3889660)
Genome browser
AA seq
759 aa
AA seq
DB search
MILPALSNALAARGYETLTPVQEAVTDPALSGSDLLVSAQTGSGKTVGFGLAIAPTLLGG
EDRLPPAAAPLALIVAPTRELALQVMRELSWLYAEAGARLVTCVGGMDARDERRALERGA
HIVVGTPGRLCDHINRGALDMTSLRAIVLDEADEMLDLGFREDLEFMLAAAPEDRRTLMF
SATVPPMIAKLAEKFQRDAQRVTTLTGAKQHADIAYQALTVSPQDAEGAVINLLRYHDAQ
NAIVFANTRAMVARLTARLSNRGFAVVSLSGELSQSERTHALQAMRDGRARVCVATDVAA
RGIDLPNLDLVVHAELPTNSEGLLHRSGRTGRAGRKGISALIVPLKSANKAERLLKFAKI
TAEWTTPPTPEDIEAKDRERLLSDPVWSETPSETEGAFAAELLALHSPEVIAAAYLRLYK
SRWSAPEELSAPGAPAPARERSAFGPSRWFALSVGNDDRAEARWLLPLLCRAGNLDKSAI
GAIRVQAAETFVELAEAAVPGFLSSLGEGGQLDEGITARALDSAPAFAPAPRAPREDRPE
RAARAPREDRPARAPREYGGSRDHSAPRTAPKPRPKPAGAPPAAMTRAVEDGTVTPYRKP
RAEAGDAPRPAKKPWSGDKPAGKPANKPFGKPAGDRKPGKSFGKPEGRPYDKSDSKPGAK
PYGKPGAKPSDKPFDKPRARPAPRDAEPAAPRPNLAADTSKRFVPPGAAKKPGKPGTGKT
FAGKPGAGKPAAGKPKGKGAAPKARAGFGGSTPPKRGKP
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgatcctgcctgccctctccaatgctcttgccgcgcgcggctatgaaaccctgacgcct
gtgcaagaggcggtaacggaccccgcgctgtctggctctgatcttctggtctcggcccag
accggatctggtaaaaccgtagggtttggccttgcgatcgcgcccaccctgctggggggt
gaggaccgattgccgcctgccgccgcaccgctggccctgatcgtggcgccaacgcgagag
ctggcgcttcaggtcatgcgcgagctgagctggctttatgccgaagccggcgcgcgtttg
gtcacttgcgttggcgggatggatgcccgtgacgagcggcgcgcgctggagcgcggggcg
catattgttgtcggcacgcccggacgtctgtgtgaccacatcaatcgcggcgcgctcgat
atgacaagcctgcgcgccatcgtgcttgacgaggccgatgagatgctcgatctcggcttt
cgcgaagacctcgaattcatgctggccgcagcgcccgaagatcgccgcacgctgatgttc
tcggccaccgtgccgccgatgatcgccaagctggctgagaaattccagcgcgatgcgcag
cgtgtgaccaccctgaccggcgcgaaacagcatgccgatatcgcctatcaggcgctgact
gtgtcaccgcaggatgccgagggcgccgtgatcaacctgctgcgttatcacgatgcccag
aatgcgattgtgttcgccaatacccgcgccatggtggcccgcctgacggcacgcctgtcc
aatcgcggctttgccgtggtctcgctctcaggcgagttgagccagtccgagcgcacccat
gccctgcaggcaatgcgcgacgggcgggcccgggtctgtgtcgccaccgatgtcgccgcg
cggggcatcgacctgcccaatctcgatctggtcgtgcatgccgaactgcccaccaattcc
gaaggcctcttgcaccgctcgggccgcacaggtcgcgccggacgcaagggcatctctgcc
cttatcgttccgctcaaatcggcaaacaaggcagagcgcctgctcaaattcgccaagatc
accgcagaatggaccacgccccccacgcccgaggatatcgaggccaaggatcgcgagcgc
ctgttgtccgatccggtctggtccgaaacgccgtccgagaccgaaggtgcctttgccgct
gaattgctggcgctgcacagccccgaggtgatcgccgccgcctatctgcgtctttacaaa
tcgcgctggtccgcacccgaggaactgagcgcccccggcgcgcccgctccggcgcgcgag
cggtcggcctttggcccaagccgctggtttgcgctgtcggttggcaatgacgaccgggcc
gaggcgcggtggttgcttccgcttttgtgccgtgctggcaatctcgacaaatccgcgatt
ggggccatccgcgtgcaggctgccgaaacctttgtcgaactggcagaggccgccgttccc
ggatttctttcgtcgctcggtgagggcgggcaactggatgagggcatcaccgcccgcgcc
ctggatagtgccccggcgtttgcccctgccccgcgcgccccgcgcgaagatcgtcccgaa
cgtgcggcccgcgccccgcgagaggaccgccctgcgcgcgcgccccgcgagtatggcggc
tcgcgcgaccattctgccccacgcaccgccccaaagccgcgcccgaaaccggcaggtgcg
ccgcccgcggcaatgacccgcgcggtcgaggatggcacggtaaccccgtatcgcaaaccg
cgtgcagaggcgggcgatgcgccgcgcccggccaaaaagccttggtccggtgacaaaccc
gctggcaaacctgccaacaagccctttggcaagcccgccggggatcgcaaacccggtaaa
tcctttggcaagcccgaaggtcggccctatgacaagtcggatagcaaacccggcgcaaag
ccctatggcaagccgggggcgaaaccgtcggacaaaccctttgacaagccgcgcgcgcgc
cctgcgccccgtgacgcggaaccagccgcgcccagacccaatcttgcggccgatacgtcc
aaacggtttgttccacccggagcagcgaaaaagcccggcaaacccggcacaggcaagacc
tttgctggcaaacccggcgcgggaaagcctgccgctggaaagcccaaaggcaaaggtgct
gcacccaaagcccgcgcgggatttggcggcagcaccccaccgaagcgcggcaagccgtga
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