Ralstonia mannitolilytica: TK49_05815
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Entry
TK49_05815 CDS
T03778
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rmn
Ralstonia mannitolilytica
Pathway
rmn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rmn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TK49_05815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmn03019
]
TK49_05815
Enzymes [BR:
rmn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TK49_05815
Messenger RNA biogenesis [BR:
rmn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TK49_05815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
P-loop_SecA
UTP25_NTPase-like
Motif
Other DBs
NCBI-ProteinID:
AJW44271
LinkDB
All DBs
Position
1:1209214..1210827
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AA seq
537 aa
AA seq
DB search
MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILRGGDLLAGAQTGTGKTAGFTLPLL
HRLSASQPNKVQTPQGMRFPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGI
NPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILN
ILPPKRQNLLFSATFSDDIRELADRLLDKPALIEVARRNTTAETVEQRIYPVDRERKREL
LAKLVRDNDWHQVLVFTRTKHGANRLAEQLTRDGIPALAIHGNKSQSARTRALTEFKAGT
LRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVDEHG
LLRDIERLIKRELPRTVLEGFEPDPTIAPEPIPNGRNNARGGRPGGGRGQPRQAAGGNAA
PREPRAPREPRRESTGSGQGQNQGQGRNGGANRQRQAQGQRDGQAAPKPRGGNGGNGQSQ
ARGQRQGQAQGNGQGGHPRRAQSTQAAQPAQKTAQPAKQPFNGLFAKAAALLGGRKG
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttttccgaactcggcttgtcagacaagctggtacgtgccgtggccgaactcggc
tacgcagaacccactccgattcaacgccaggccatccccgccatcctcaggggcggcgac
ctgctcgccggtgcacagaccggcaccggcaagaccgccggtttcacgctgccgttgctg
caccgcctgtctgcatcgcagcccaacaaggtgcagacgccgcagggcatgcgcttcccg
atccgtgcgctggtgctgacgcccacgcgtgagcttgccgcgcaggtggaagaaagcgtg
cgcgcctatggcaaatacctgccgctgaagtcgatggtgatgttcggcggcgtcggcatc
aacccgcagatcgatgcgctcaagcgcggcgtcgatatcgtcgtggccacgccgggccgt
ctgctcgaccacgtcggccagcgcaccatcgacctgtcgcacattgaactgctggtgctg
gacgaagccgatcgcatgctcgacatgggcttcatccacgacatccgcaagatcctcaac
atcctgccgccgaagcgtcagaacctgctgttctcggccacgttctccgacgacattcgc
gaactggccgaccgtctgctcgacaagccggcgctgatcgaagtcgcgcgccgcaacacg
acggccgagacggtcgagcagcgcatctatccggtcgaccgcgagcgcaagcgtgaactg
ctcgccaagcttgtgcgcgacaacgactggcaccaggtgctggtcttcacgcgcaccaag
catggcgcgaaccgcctggccgagcagctcacccgcgacggcatccccgcgctggccatt
cacggcaacaagagccaatcggcgcgcacgcgcgcgctgacggagttcaaggccgggacg
ctgcgcgtgctggtcgccaccgatatcgccgcgcgcggcatcgacatcgaccaactgccg
cacgtggtcaacttcgacctgccgaatgtgccggaagactacgtgcaccgtatcggccgc
acgggccgcgcgggtgcgcagggcgaggcgatctcgctggtctgcgtggacgagcacggc
ctgctgcgcgacatcgaacgcctgatcaagcgcgagctgccgcgcaccgtgctggaaggc
ttcgagccggacccgacgattgcgccggagccgattccgaatgggcgcaacaacgcgcgt
ggcggtcgcccgggcggtggccgcggccagccgcgccaagccgctggcggcaatgccgcg
ccgcgcgaaccgcgtgctccgcgagagccccgccgtgaatcgaccggcagtggccagggg
cagaaccaaggccaaggccgcaatggcggcgcaaaccgccagcgccaggcgcaaggtcag
cgcgacggccaggcggcaccgaagccgcggggcggcaacggcggcaatggccaatcgcag
gcgcgcggccagcgccaagggcaggcgcaaggcaacgggcagggcggccatccgcgtcgt
gcgcagagcacgcaagccgcgcaacctgcacagaagaccgcacagccggccaagcagccg
ttcaacggcctgttcgccaaggccgctgcattgctcggcggccgcaaaggctga
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