Ralstonia mannitolilytica: TK49_09430
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Entry
TK49_09430 CDS
T03778
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rmn
Ralstonia mannitolilytica
Pathway
rmn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rmn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TK49_09430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmn03019
]
TK49_09430
03009 Ribosome biogenesis [BR:
rmn03009
]
TK49_09430
Enzymes [BR:
rmn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
TK49_09430
Messenger RNA biogenesis [BR:
rmn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
TK49_09430
Ribosome biogenesis [BR:
rmn03009
]
Prokaryotic type
rRNA processing factors
TK49_09430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AJW44908
LinkDB
All DBs
Position
1:complement(1978683..1981670)
Genome browser
AA seq
995 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNY
GEERHGFLPFKEVARAYFKDGVDVRSARIQDALSEGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGEDRQELRETMAQLQVPDGMSIIARTAGIGRSAEELQ
WDLNYLMQLWKAVDGAAQENKAPLLIYLESSLVIRAIRDYFQPDIGEILIDTDDIYDQAR
AFMSVVMPDNMNRVKKYRDDVPLFSRFQIEHQIESAYSRMVMLPSGGAIVIDHTEALVAI
DVNSARATKGADIEETALRTNLEAADEIARQLRLRDLGGLIVIDFIDMESSKAQKDVETR
LKDALRHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQ
VLRIIQEEAMKENTAAIHCQVPVEVAAFLLNEKRPDINLIETRFKVNVLLIPNKHLETPH
YKLERLRHDDPRLDDNKASYKMAEEAAKELEADTAYSTRKEAAKPRQEAAVKGITPEQPA
PVSVPRAERPARAEAAPAPQAPAPVPAQGGFVSWLKSLFGAKPAEPVVAAPVQAPKQRAE
DGNRQGRGNRQERGARNGQRGERGERQGQNGRDANRQGRDRNEAREGQQAGQQQGQRDGQ
RDNQRGNRDRNRQPAQADSAARETADARQPQQGQEVRGEGQGRRERNQERRERQPREGRE
PREAREGREPRENRDRDQQAKEAAHAAAAATVEGLIDPTGTAEVPQPPVEAAVLAEAAGL
EGAAPAEGTGEGEERRRRGRRGRNRYRRDREGAEGVRAEGESAETAEEREAVGETYTEPA
VPATVTESVQPASLAPVEAPAPVVHEPVQAAEAVAPVSAMPRTQPVEPVATPAPAPAADV
THEAIVTAFAEVPAPVSTVAKASPLPIETLQSVLANAGMTWVHTDAQKLQAAQEEAARAV
TPPRVPRERKPLPPIQQGPMILVETNRPAGGADQQ
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgttcaatgcgacgcagcaggaagagctgcgcgtcgcgattgtcgac
ggtcagaaactgatcgacatcgacatcgaaaccgccggacgcgagcagcgcaaaggcaac
atctacaagggtgtcatcacccgcatcgaaccgtcgctggaggcatgcttcgtcaactac
ggcgaagagcggcacggctttctccccttcaaggaagtcgcccgcgcctacttcaaggat
ggcgtggacgtgcgttcggcgcgcatccaggatgcgctctccgaaggccaggagttgatc
gtccaggtggaaaaggaagagcgcggcaacaagggcgcggccctgaccacgttcatctcg
ctggccggccgctacctggtgctgatgccgaacaacccgcgcggcggcggcgtatcgcgc
cgcatcgagggcgaagaccgccaggaactgcgcgagacgatggcgcagctgcaagtgccg
gacggcatgagcatcatcgcccgcaccgccggtatcggccgctcggccgaagaactgcag
tgggacttgaactacctgatgcagctgtggaaggccgtcgacggcgctgcgcaggagaac
aaggctccgctgctgatctatctcgaatcgagcctggtgatccgcgcgattcgcgattac
ttccagccggatatcggcgaaatcctgatcgacacggacgatatctacgatcaggcccgc
gccttcatgagcgtggtgatgcccgacaacatgaatcgggtgaagaaataccgcgacgac
gtcccgctgttctcgcgtttccagatcgaacaccagattgaatcggcgtactcgcgcatg
gtgatgcttccttcaggcggcgccatcgtgatcgaccataccgaggcgctggtcgccatc
gacgtgaactcggcgcgcgccaccaagggcgccgacatcgaggaaaccgcgctgcgcacg
aacctcgaggcggccgacgagatcgcccgccagctccgtctgcgcgacctgggtggcctg
atcgtgatcgacttcatcgacatggagtcgagcaaggcccagaaggatgtcgagacccgc
ctgaaagacgcgctgcgccacgaccgcgcccgcgtgcagatgggcaagatcagccgcttc
ggcctgatggagctgtcacgccagcgcctgcgtccgtcgctgtcggaaggctcgcacgtc
acctgcccgcgctgtaacggcaccggccacatccgcgataccgaatcgtccgccctgcag
gtgctgcgcattatccaggaagaggcgatgaaggaaaacaccgccgccatccactgccag
gtgccggtggaagtggctgcgttcctgctcaacgagaagcgcccggacatcaacctgatc
gagacgcgcttcaaggtcaatgtgctgctgatcccgaacaagcatctggagacgccgcac
tacaagctcgagcgcctgcgccacgacgatccccgcctggacgacaacaaggccagctac
aagatggccgaagaggccgccaaggaactggaagccgacaccgcgtacagcacccgcaag
gaagcggccaagccgcgccaggaagcggccgtcaagggcatcacgccggagcagcccgct
cccgtgtcggtgccacgcgccgagcgcccggcccgcgccgaggctgccccggctccgcag
gcgcccgctccggtgcctgcgcagggtggctttgtgtcgtggctgaagtcgctgtttggc
gccaagccggccgagcccgtggtggctgcgccggtccaggcaccaaagcaacgtgcggaa
gacggcaaccgccagggccgcggcaatcgccaggagcgcggtgcgcgtaacggccagcgt
ggcgaacgtggcgagcgccagggccagaacggccgcgacgccaaccgtcaaggccgcgac
cgcaacgaggcccgcgagggtcaacaagcgggccaacagcagggccagcgcgatggacaa
cgcgacaaccagcggggcaaccgcgaccgcaaccgccagccggctcaagcggacagtgct
gcacgggagactgcggacgcccgccagccgcagcagggccaggaggtccgaggtgaaggc
cagggccgtcgcgaacgcaatcaggaacgtcgcgagcgccagccccgcgagggccgtgag
ccgcgtgaggcccgcgaaggccgcgagccgcgcgaaaaccgcgatcgcgatcagcaagcc
aaggaagccgcccacgccgcagccgccgccaccgtggaaggcctgatcgacccgacgggt
accgctgaggtgccgcagccgcccgtggaagcagcggtgctggcagaagccgcgggcctg
gaaggcgccgcaccggcggaaggcacgggtgagggcgaagagcgccgccgccgcggtcgc
cgtggtcgcaaccgctatcgccgtgaccgtgaaggcgcggaaggcgtgcgcgcagagggc
gaaagcgcggaaaccgcagaggaaagggaagcggttggcgaaacctacaccgagcctgcc
gtgcccgccacggtgacggaatcggtgcagcccgcctcgttggcgcccgtagaagcgccg
gcgccggtggtccacgagcccgtgcaggccgcagaagccgtggcgcctgtgtccgcgatg
ccgagaacgcagccggtcgaaccggtcgcgacaccggcaccggcaccggcagccgacgtg
acgcacgaggcgatcgtgacggcgtttgccgaagtgcccgcgccggtgagcacggtggcc
aaggcctcgccgctgccgatcgagacgctgcaaagcgtgctggccaacgccggcatgacg
tgggtccacacagacgcgcaaaagctgcaagccgcgcaggaagaagccgcgcgtgccgtc
acaccgccgcgtgtgccgcgcgaacgcaagccgctgccgccgatccagcagggtccgatg
atcctggtcgagaccaaccgccccgcgggtggcgcagaccagcagtaa
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