KEGG   Ralstonia mannitolilytica: TK49_09695
Entry
TK49_09695        CDS       T03778                                 
Name
(GenBank) single-stranded DNA exonuclease
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rmn  Ralstonia mannitolilytica
Pathway
rmn03410  Base excision repair
rmn03430  Mismatch repair
rmn03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:rmn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    TK49_09695
   03430 Mismatch repair
    TK49_09695
   03440 Homologous recombination
    TK49_09695
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rmn03400]
    TK49_09695
DNA repair and recombination proteins [BR:rmn03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     TK49_09695
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     TK49_09695
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      TK49_09695
SSDB
Motif
Pfam: DHH DHHA1 RecJ_OB Glyco_transf_4
Other DBs
NCBI-ProteinID: AJW44950
LinkDB
Position
1:complement(2030623..2032317)
AA seq 564 aa
MTRIAVRSHSAEAATTLAGHGIHPVLARILAARGVARPDELSTELSDLLPPSQLKGIDDA
ARYLADAIAASKRLLIIADYDCDGATACAVGVRGLRMLGAQVSYIVPNRFEYGYGLSPEI
VALAAREKPDVLVTVDNGIADVAGVAAANALGIDVVITDHHMPGAQLPDARVIVNPNQPG
CGFPSKNLAGVGVMFYVLLALRAELRNRGVFTLQDQPRLDALLDLVALGTVADVVKLDAN
NRRLVAQGLKRMRAGRMCPGIAALFRVAGREARRASTFDLGFGLGPRLNAAGRLADMTLG
IECLLTDDYDRALAIAAELDGMNRERREIEAGMQQEALAILDTMHAIDGGGRHTIAVYNE
TWHQGVIGIVASRIKDKFHRPVFTFAPGDDGVIKGSGRSIPGFHLRDALDAVHKRCPGLI
VKFGGHAMAAGLTLREDGFDAFVAAFEAVGREWLTEALLSRVLETDGEADPDCFTPQFVE
LLETHVWGQGFPAPSFCGEFDVLSQAVLKDKHLKLKLGRGKQQFDAIWFNHAEPLGASAY
VAYRLDNNTFNGITRVQMVIEHAQ
NT seq 1695 nt   +upstreamnt  +downstreamnt
atgacccgcatcgctgtccgttcgcactccgccgaagccgccaccacgctggccggccac
ggcatccaccccgttctcgcgcgcatcctggccgcccgtggcgtcgcccggcccgatgaa
ctgtcgaccgagctgtccgacctgctgccgccgtcgcaactcaaggggatcgacgacgcg
gcccgctatctggccgacgccatcgccgccagcaagcgcctgctcatcattgccgactac
gactgcgacggcgccacagcctgcgccgtcggcgtgcgcggcttgcgcatgctcggcgcg
caggtgagctacatcgtgccgaaccgcttcgaatacggctacggcttgtcgccggagatc
gtggcgctggcggcgcgcgaaaagcccgacgtgctcgttaccgtcgacaacggcatcgcc
gacgtggccggcgtggctgcggccaatgcgctcgggatcgacgtcgtcatcaccgatcac
cacatgccgggcgcacagttgcccgacgcgcgcgtgatcgtcaatccgaaccagccgggc
tgcggctttcccagcaagaatctggcgggcgtcggcgtgatgttctacgtgctgctggca
ttgcgggcggagctgcgcaaccggggcgtcttcacgctgcaggaccagcctcgcctcgat
gcgctgctcgacctggtggcgctcggcaccgtggccgacgtggtcaagctcgacgccaac
aaccgccggctcgtggcgcaagggctcaagcgcatgcgcgcggggcggatgtgtcccggc
atcgccgcgctcttccgcgtggccggccgcgaggcccgccgtgcgtccacgttcgatctg
ggcttcggcctcggcccgcgcctgaacgccgccgggcgcctggccgacatgacgctcggc
atcgaatgcctgctcaccgacgactacgaccgcgccctggccatcgccgcggaactcgac
ggcatgaaccgcgagcgccgcgagatcgaagccggcatgcagcaggaggcgctggccatc
ctcgacaccatgcacgccatcgacggcggcggccgccacaccatcgcggtctacaacgag
acgtggcaccagggcgtgatcggcatcgtcgcctcgcgcatcaaggacaagttccaccgc
cccgtcttcaccttcgcgcccggcgacgacggcgtcatcaagggctccggccgttcgatt
cccggctttcacctgcgcgacgcgctggacgccgtccacaagcgctgccctgggctgatc
gtgaagtttggcggccacgcgatggcggcggggctgacgctgcgcgaagacggcttcgat
gcattcgtcgccgccttcgaggccgtcggccgggagtggctgaccgaggcgctgctctcg
cgcgtgctggaaaccgatggggaggccgacccggattgcttcacgccgcaattcgttgag
ttgctcgaaacccacgtctggggccagggctttccagcgccgagcttctgcggcgagttc
gacgtgctgtcgcaggccgtgctgaaagacaagcacctcaagctcaagctcggccgcggc
aaacagcaattcgacgccatctggttcaaccacgccgagccgctgggcgcgtccgcctat
gtggcctaccgcctcgacaacaacaccttcaacggcatcacccgcgtgcagatggtgatc
gagcacgcgcaatag

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