Ralstonia mannitolilytica: TK49_12150
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Entry
TK49_12150 CDS
T03778
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rmn
Ralstonia mannitolilytica
Pathway
rmn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rmn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TK49_12150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rmn03400
]
TK49_12150
Enzymes [BR:
rmn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TK49_12150
DNA repair and recombination proteins [BR:
rmn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
TK49_12150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
Glyco_tran_WecG
AAA_30
SNF2-rel_dom
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AJW45391
LinkDB
All DBs
Position
1:2565773..2569204
Genome browser
AA seq
1143 aa
AA seq
DB search
MSDFSLSALPVVKPGQRFLFSGLQGAADALLLARYLEQHRAAVPMLAVICANAVDAQRLA
EELRWFAPQARVKLLPDWETLPYDNFSPHQDLISERLATLHDLQNGACDILLVPASTALQ
RIAPPSFLAAYTFFFKKGEKLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLFPMG
SPLPYRLDLFGDEIETIRAFDPDTQRSLYPVNEVRLLPGREFPMDEASRTAFRGRWREVF
EGDPTRSPIYKDIGNGVPSAGIEYYLPLFFEETATLFDYLPGATHLAFVGDIEGAVRRFW
ADTTQRYNFMRHDRERPLLQPSALYLDEESFFVAAKPHARLVLRTEPGDAPLSLPLPNVA
VNRRAEDPLVNLESFLMRGNCRVMICAESAGRRETLAQMLAASGLHPEGVADFADLLAGD
AKFVLGVAPLYQGFILGDERIAFITETELYAQTTRRAGRRKQEQATAVDSMVRDLAELKI
GDPVVHSEHGIGRYQGLVSVDTGNGEEEFLHLDYDKGSKLYVPVHQLHVISRYSGADPET
APLHSLGSGQWEKAKRKAAQQIRDTAAELLNLYARRAMRQGFAFPLAPEDYVKFAESFGF
EETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAILAPTT
LLAEQHYQTLVDRFADWPVRIAEISRFKNKKEIDAAIEAINAGTIDIVIGTHKLLSPDVK
FNRLGLVIIDEEHRFGVRQKEALKTLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATA
PQKRLAIKTFLRREEDGVLREAILRELKRGGQVYFLHNEVETIENKRAKLEELIPEARVA
VAHGQMHERELERVMRDFVAQRANILLCTTIIETGIDVPTANTILIHRADKFGLAQLHQL
RGRVGRSHHQAYAYLLVHDVDGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEVL
GDKQSGEISEIGFQLYTDMLNQAVKSLKAGKEPDLMAPLAATTEINLGTPALLPQDYCGD
VQERLSLYKRLANCESSEAIDNIQEELIDRFGKLPPQAQSLIETHRLRIAAQPLGIRKID
TGTNAVTLQFVPNPPIDAIKIIDLVQKNRQIKLAGQDRLRIENIPAETAALAQTIRHAMR
QLM
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatttctcgctttctgccctgcccgtcgtcaaaccaggccagcgcttcctcttc
agcggcctgcagggcgcggcggacgccctgctcctggcgcgctatctcgaacagcatcgc
gctgccgtgccgatgctggcggtgatctgcgccaatgccgtcgatgcgcagcgcctggcg
gaagaactgcgctggtttgctccgcaggcccgtgtgaagctgctgccggactgggagacg
ctgccgtacgacaatttctcgccgcaccaggacttgatctccgaacggctggccacgctg
cacgatctgcagaatggcgcgtgcgacatcctgctggtgccggcatcgacggcattgcag
cgcatcgctccgccgtcctttctggcggcctacacgttcttcttcaagaagggcgaaaag
ctggacgaggcggcactcaaggcgcagttcacgctggccggctacgaacacgtcagcgcc
gtcatgcgccccggcgaatactcggtgcgcggcggcctgatcgacctgttcccgatgggc
tcgccgctgccgtaccggctggacctgtttggcgacgagatcgagaccatccgcgcgttc
gaccccgacacgcagcgcagcctctaccccgtgaacgaagtgcgcctgctgcccggccgt
gaattcccgatggacgaagcgtcgcgcacggccttccgcggccgctggcgcgaggtgttc
gagggcgacccgacgcgctcgccgatctacaaagacatcggcaacggcgtgccttcggcc
ggcatcgaatactacctgccgctgttctttgaagagaccgccacgctcttcgactatctg
ccgggcgccacgcacctggccttcgtgggcgacatcgaaggtgcggtgcgccgcttctgg
gccgacaccacgcagcgctacaacttcatgcgccacgaccgcgagcggcccttgctgcag
ccttcggcgctgtacctcgacgaagaatcgttcttcgtggccgccaagccgcatgcccgt
ctcgtgctgcgcaccgagcccggcgacgcgccgctgtcgctgccgctgcccaacgtggcc
gtcaaccggcgtgcggaagatccgctcgtcaacctcgaatccttcctgatgcgcggcaac
tgccgcgtgatgatctgcgccgaatccgccggccgccgcgagacgctcgcgcagatgctc
gcggccagcggcctgcatccggaaggcgtggccgatttcgccgacctgctcgccggcgac
gcgaagttcgtcctcggcgtggcgccgctttaccaggggttcatcctcggcgacgagcgc
atcgccttcatcaccgaaaccgagctgtacgcgcaaaccacgcgtcgcgccggccgtcgc
aagcaggaacaggccaccgccgtcgattcgatggtgcgcgacctggccgaactgaagatc
ggcgacccggtggtgcacagcgagcacggcatcgggcgctaccagggcctggtgtcggtg
gacacgggcaacggcgaggaggaattcctccacctcgattacgacaagggcagcaagctg
tacgtgccggtgcaccagctgcacgtgatctcgcgctactcgggcgccgatccggaaacg
gcgccgctgcactcgctgggctcgggccagtgggaaaaggccaagcgcaaggcggcgcag
cagatccgcgacacggcggccgaactgctgaacctgtacgcacgccgtgcaatgcgccag
ggctttgccttcccgcttgcgccggaggactacgtcaagtttgccgagagcttcggcttt
gaagaaacgcccgaccaggccgccgccatcgctgcggtgatcggcgacatgacgtctggc
aagccgatggaccgactcgtctgcggcgacgtcggcttcggcaagacggaagtcgcgctg
cgtgccgcgtttgttgcggtgatgggcggcaagcaggtggccatcctcgcgccgaccacg
ctgctggccgaacagcattaccagacgctcgtcgaccgctttgccgactggccggtgcgc
attgccgagatttcgcgtttcaagaacaagaaagagatcgacgccgcgatcgaagccatc
aacgccggcacgatcgacatcgtgatcggcacgcacaagctgctctcgcctgacgtgaag
ttcaaccgcctggggctcgtcatcatcgacgaggaacaccgctttggcgtgcgtcagaaa
gaggcgctcaagacgctgcgcgccgaggtggacgtgctcacgctcaccgccacgccgatc
ccgcgtacgctgggcatggcgctcgaaggcctgcgcgatttttcggtgattgcgaccgcg
ccgcaaaagcgcctggccatcaagacgttcctgcgccgcgaggaagacggcgtgctgcgc
gaggccatcctgcgcgagttgaaacgcggcggccaggtctacttcctgcacaacgaggtc
gagaccatcgagaacaagcgcgccaagctggaggaactgattccggaagcacgcgtggcg
gtcgcccacggccagatgcacgagcgcgaactcgagcgcgtgatgcgcgatttcgtggcc
cagcgcgccaacatcctgctgtgcacgacgatcatcgaaaccggcatcgacgtgcccacg
gccaacacgatcctgatccaccgcgcggacaagttcggcctggcgcagctgcaccagctg
cgcggccgtgtcggtcgctcgcaccaccaggcgtatgcgtacctgctggtgcacgatgtg
gacgggctgaccaagcaggcacagcgccgcctggaggcaatccagcagatggaggagctt
ggctcaggcttctacctggcgatgcacgacctggaaatccgcggcgccggcgaggtgctc
ggcgacaagcagtctggcgagatctccgagatcggcttccagctttacacggacatgctg
aaccaggcggtgaagtcgctcaaggcgggcaaggagcccgatctgatggcgccactggcc
gccaccaccgaaatcaacctcggcacgcctgccctgctgccccaggactattgcggcgac
gtacaggagcgcctgtcgctgtacaagcgcctggccaactgcgagagcagcgaggccatc
gacaacatccaggaagagctgatcgaccgcttcggcaagctgccgccgcaggcgcagtcg
ctcatcgagacgcatcgtctgcgcattgccgcgcagccgctgggcatccgcaagatcgac
accggcacgaacgccgtcacgctgcagttcgtgccgaacccgcccatcgacgccatcaag
atcatcgatctcgtgcagaagaaccggcagatcaagctggccgggcaggaccgcctgcgt
atcgagaacatcccggccgagaccgctgcgctcgcgcagaccattcgccatgccatgcgg
caattgatgtga
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