Ralstonia mannitolilytica: TK49_14465
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Entry
TK49_14465 CDS
T03778
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rmn
Ralstonia mannitolilytica
Pathway
rmn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rmn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TK49_14465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmn03019
]
TK49_14465
Enzymes [BR:
rmn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TK49_14465
Messenger RNA biogenesis [BR:
rmn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TK49_14465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Fe-ADH
P-loop_SecA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AJW45792
LinkDB
All DBs
Position
1:complement(3056605..3058092)
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AA seq
495 aa
AA seq
DB search
MNTATSSEAPVNESVTFDSFGLHADILRALAESGYTKPTPIQAAAIPVVTAGRDVMGAAQ
TGTGKTAGFSLPIIQNLLPDANTSASPARHPVRALILTPTRELADQVYDNVAKYAKYTAL
RSAVVFGGVDMNPQTEQLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDM
GFLPDLQRIINLLPAHRQTLLFSATFSPEIKKLAASYLRHPQTIEVARSNATAENVRQVI
YTVPDNHKQAALVHLLKQRAEQGLPRQCIVFSNSKIGCSRLARALEREGINASAIHGDKT
QTERMQTLEAFKQGTVDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAG
ASGDALSLFAPGDERLLADIEKLIKRNLPREQLEGFDPTGEQARDRERRERDEKRARAEV
RRAREREERNGARVLDHTVVRPAFRPSDDPFFNRPYESTAPVETAETAKPAQAAGHPRTA
KRPIAALLGGVPRKR
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgaacactgcgacatcgtcagaagcgccggtcaacgaatcggtgacattcgacagcttt
ggcctgcacgccgatatcctccgcgcgctggccgaaagcggctataccaagcccacgccc
atccaggcggctgccattccggtggtcactgccggccgtgacgtcatgggcgcggcgcaa
acaggcaccggcaagaccgccggtttctcgctgcccatcatccagaacctgctgccggac
gccaacacgagcgcatcgccggcgcgccacccggtgcgggcgctgatcctcacgccgacg
cgcgaactggccgaccaggtgtacgacaacgttgccaagtacgcgaagtacacggcgctg
cgcagcgcggtcgtgttcggcggcgtcgacatgaacccgcagaccgagcaactgcgccgc
ggcgtcgaaatcctcgtggccacgccggggcgtctgctggaccacgtgcagcagcgcagc
gtgaacctgtcgcaggtgcgcatgctcgtgctggacgaagccgaccgcatgctcgacatg
ggcttcctgcccgacctgcagcgcatcatcaacctgctgccggcacaccgccagacgctg
ttgttctcggcgacgttctcgccggagatcaagaagctggccgccagctacctgcgtcat
ccgcagaccatcgaagtggcgcgcagcaacgccacggcagagaatgtccgccaggtcatc
tacaccgtgccggacaaccacaagcaagccgcgcttgtgcacctgttgaagcagcgtgcc
gagcagggcctgccgcgccagtgcatcgtgttttctaacagcaagatcggctgctcgcgc
ctggcgcgcgcgctggagcgcgaaggcatcaacgccagcgccatccacggcgacaagacc
cagaccgaacgcatgcagacgctcgaagcgttcaagcagggcaccgtcgatgtgctggtc
gccaccgacgtggcagcgcgcggtctcgacatctcgcagatgccgtgcgtgatcaacttc
gacctgccgttcaatgcggaagactatgtgcaccgcatcggccgcacgggccgcgccggc
gcgtccggtgacgcactgtcgctgttcgcccccggcgatgagaggctgctggccgatatc
gagaagctgatcaagcgcaacctgccgcgcgagcaactggaagggttcgaccccaccggc
gaacaggcccgcgaccgtgaacgccgcgagcgtgacgagaagcgtgcgcgcgccgaagtg
cgccgtgcccgtgagcgcgaggagcgcaacggcgcccgcgtgctcgaccacaccgtcgtc
cgcccggcattccggccctcggatgatccgttcttcaatcgcccgtacgaatcgacggcg
cccgtggaaacggccgagaccgccaagccagcacaagccgccggacatccgcgcacggcc
aagcgtccgatcgcggcgctgctgggcggcgtgccgcgcaagcgttaa
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