Ralstonia mannitolilytica: TK49_22305
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Entry
TK49_22305 CDS
T03778
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
rmn
Ralstonia mannitolilytica
Pathway
rmn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rmn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TK49_22305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rmn03400
]
TK49_22305
DNA repair and recombination proteins [BR:
rmn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TK49_22305
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
TK49_22305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_inter
AAA_29
AAA_21
SMC_N
AAA_16
nSTAND1
RsgA_GTPase
AAA_22
AAA_33
AAA_25
AAA_23
Viral_helicase1
AAA_18
UvrA_DNA-bind
NACHT
nSTAND3
DnaJ_CXXCXGXG
DUF4350
Anti-TRAP
RNA12
DUF87
Cas12f1-like_TNB
Motif
Other DBs
NCBI-ProteinID:
AJW47363
LinkDB
All DBs
Position
2:complement(1292114..1297951)
Genome browser
AA seq
1945 aa
AA seq
DB search
MSSGVIRLRGARQHNLKNLDLDLRTGEMTVVTGPSGSGKSSLVFDTLYAEGQRRYVETFS
AYARQFLDRMDRPQVEHVEGVPPAIAIDQTNPVRSSRSTVGTMTELNDHLKLLFARAAQL
FDRETALPVRHDTPETIYDELLARTREADPRLVVTFPVELPANTSAEEIAQWLSVSGYTR
VQAERVSGERKLLDVVADRFRLQGTERARALEAIESSLKRGGGRVNVYVLPADDAAEPEI
WRFSTGLHCPESDLRYADPQPALFSFNSAYGACDACRGFGRVIGVDLGLVIPDERKTLRE
GAIKPMQTPAWKECQDDLMRYSAAAGIPRDTPWAELTQAQKDWVIHGDPTFKRGGWNKQW
YGVRRFFDYLESKAYKMHIRVLLSKYRSYTTCETCGGARLKTESMQWRLGTKENADAVLA
PEHRFMPRGVAWSRAQLEALPGLTVHDLMLLPIERIRRFFDELTLPSTLLDDALKLLLDE
VRTRLAYLCDVGIGYLTLDRQSRTLSGGEVQRINLTTALGTSLVNTLFVLDEPSIGLHPR
DLDRIVEAMQRLRDAGNTLVVVEHDPSVMLAADRLIDMGPGPGERGGTIVFDGTPAAIRQ
ADTLTGAYLSGKRRVAEATDWQARPVNDATPRLVLEGASEHNLRDVTVEIPLQRLVCVTG
VSGSGKSTLIQDVLHPALARHFGKATESPGAFRALRGADQICDVVFVDQSPIGKTARSNP
ASYVGAFDEIRKLFAKAPMALQRGYTAGTFSFNSGDGRCPTCGGSGFEHVEMQFLSDIYL
RCPDCDGTRYRAEILEVKIARAGRALSVADVLELTVSEAATVFADDADVLRVLQPIVDVG
LEYVKLGQPVPTLSGGEAQRLKLAGFLAEAAQAAQAAARKRVKPDAPANAGRLFMFDEPT
TGLHFDDIAKLMRAFGKLLDAGHSLIVIEHNLDVVRAADWIIDLGPEGGDAGGLLVCAGT
PAAVKACAASHTGAALKQYEASIGKPEATEGVPLQTALADRRAKRTALAEVQGENVVRIV
HAHEHNLKGLNVDIPHGKFNVVTGVSGSGKSTLAFDILFHEGQRRYLESLNAYARSIVQP
AGRPEVDAVYGIPPTVAIEQRLSRGGRKSTVATTSEVWHFLRLLYVKLGVQHCIHDGTPV
SAQSPEAIFAQLMRDHRGQHIGLLAPLVVNRKGVYTDLAKWAKARGYTHLRVDGEFLTVD
PWPRLDRFREHTLELPVGDIVVAPENEAALRALMEQALEYGKGIMHVLAPLDGLQHAMHN
GDTAHVGSVKVFSTKRACATCGTSYPELDPRMFSYNSKHGWCASCVGTGLALTREQRAAF
DDTVLGGDDRGREQTLPSEEVDPEGMTDLPCPDCHGTRLNPTARAVTFADKPIVDIAQWT
VSQTRRWVEGLDLTGRDADIARDVVAEIHSRLSFLEEVGLGYLSLDRAAPSLSGGEAQRI
RLAAQLGSNLQGVCYVLDEPTIGLHPRDNQILLDALRKLGDKGNTLVVVEHDEDTIRRAD
HIIDIGPGAGKRGGTLVAQGGVADLAAQPDSLTGRFLSQPIEHPLQPRRQVIAPRAGKQA
VPEQWLTVHGAKLHNLRNVTATMPLSRLVAITGVSGSGKSTLARDVLMTNLLDAVGRSVL
SSPATRRARKAAQAETPEAKMPRKLDVKHDWHGCDSVTGWETIDRVLEVDQTPIGKTPRS
CPATYIGVWDTIRKLFADTLEARARGYTASRFSFNTGDGRCPACEGQGVRTIAMSFLPDV
KVACDVCHGQRFNPETLAVTWRGKNIGEVLTMEIDEAVEFFGAMNSIAHPLQLMKDVGLG
YLTLGQPSPTLSGGEAQRIKLVTELAKVRDDITRRGQKAPHTLYVLDEPTVGLHMADVAK
LIRVLHRLADGGHSVIVIEHDLDVIAEADWILDLGPEGGDGGGTIVAACGPEALTRVKAS
HTGAALVPVLARGKQVDPSKEGATV
NT seq
5838 nt
NT seq
+upstream
nt +downstream
nt
atgtcctccggtgtcattcgcctgcgcggagcccgtcagcacaatctcaagaacctcgat
ctggacctgcgcacgggcgagatgaccgttgtcaccggcccgtccggctccggcaagtcc
agcctggtgttcgacaccttgtacgcggaaggccagcgccgctacgtcgagaccttcagc
gcctacgcgcgccagttccttgaccgcatggaccggccgcaggtcgagcacgtggaaggc
gtgccgcccgccatcgccatcgaccagaccaacccggtgcgcagctcgcgatcgacggtc
ggcacgatgacggagctgaacgatcacctcaagctgctgtttgcccgcgcggcgcaattg
ttcgatcgggaaaccgcgctgcccgtgcggcacgacacgccggaaaccatctatgacgag
ctgctggcacgcacgcgcgaggctgatccgcgcctggtcgtgacgttcccggtggagctg
ccggccaacacgagcgccgaggagatcgcgcagtggctgtcggtcagcggctatacgcgc
gtgcaggccgagcgcgtgagcggcgaacgcaaactgctcgacgtggtcgcagaccgcttc
cggctgcaaggcaccgaacgcgcccgcgcactggaggcgatcgagtcgtcgctcaagcgc
ggcggcggccgggtcaacgtctacgtattgcccgccgacgatgccgccgagcccgagatc
tggcgcttttcgaccggcctgcactgcccggagagcgacctgcgctacgccgatccgcaa
cccgccctcttctcgttcaactctgcgtatggcgcgtgcgatgcctgccgcggtttcggt
cgcgtgatcggcgtggacctcggcctcgtcatcccggacgagcgcaagacgctgcgcgaa
ggcgccatcaagccgatgcagaccccggcgtggaaggagtgccaggacgatctgatgcgc
tattcggcggcggccggcattccgcgcgacacgccctgggctgaactcacgcaggcgcag
aaggattgggtcatccatggcgaccccacgttcaagcgcggcggatggaacaagcagtgg
tacggcgtgcgccggttcttcgattacctggaatcgaaggcgtacaagatgcacatccgc
gtgctgctctcaaagtaccgcagctacacgacctgcgaaacctgcggcggtgcacgactg
aaaaccgaatcgatgcaatggcgcctcggcaccaaggaaaacgccgacgccgtgctggcg
cccgaacaccgcttcatgccgcgcggcgtggcctggagccgcgcccagctcgaagccttg
cccggcttgaccgtgcacgacctgatgctgctgccgatcgagcgcatccgccgtttcttc
gatgaactgacgctgccgtccacgctgctcgacgacgcgctcaagctgctgctggacgag
gtgcgcacgcgcctggcctatctgtgcgacgtcggcatcggttacctgacgctcgaccgg
cagagccgcacgctgtcgggcggcgaagtgcagcgcatcaacctgaccaccgcgctgggc
acgtcgctcgtcaacacgctgttcgtgctggacgaacccagcatcggcctgcacccgcgc
gatctcgatcgcattgtcgaagccatgcagcgcctgcgcgatgccggcaacacgctggta
gtggtagagcatgatccatccgtgatgctcgcggccgaccgcctgatcgacatgggcccc
ggccccggcgagcgcggcggcacgatcgtcttcgacggcacaccggcggccattcggcag
gccgacacgctcaccggcgcgtatctgtcgggcaagcggcgcgtggccgaagcgacggac
tggcaagcgcgtcccgttaacgatgccacgccgcgcttggtactcgaaggcgcgtcggaa
cacaacctgcgcgatgtcacggtcgagattccgctgcagcgcctggtgtgcgtgaccggc
gtgtccggctcgggcaagtcgacgttgattcaggacgtgctgcaccccgcgctggcgcgg
cactttggcaaggcaacggagtcgccgggcgcattccgtgcgctgcgtggcgcggaccag
atctgcgatgtggtcttcgtcgaccaatcgccaatcggcaagaccgcgcggtcgaacccc
gccagctacgttggcgccttcgatgaaatccgcaagctgttcgccaaggcgccgatggcg
ctgcagcgcggctacacggccggcacgttcagcttcaactcgggcgacggccgttgcccg
acgtgcggcggttcgggcttcgaacatgtcgagatgcagttcctgtccgacatctacctg
cgctgccccgattgcgacggcacgcgctatcgcgccgagatcctcgaggtgaaaatcgcg
cgcgccggccgtgcattgtccgtggccgatgtgctcgagctgacggtgagcgaagccgcc
accgtcttcgccgatgacgctgatgtgctgcgcgtgctgcagcccatcgtcgatgtgggc
ctggaatacgtgaagctcggccagcctgtgccgacgctctcgggcggcgaggcgcagcgc
ctgaagctggcgggcttcctcgccgaagccgcgcaagcggcccaggcggccgcacgcaag
cgcgtcaaacccgatgcgcctgccaatgccggccggctcttcatgtttgacgaaccgacc
accgggctgcacttcgacgacatcgccaagctgatgcgcgcgttcggcaaactgctcgac
gccgggcattcgctgatcgtgatcgagcacaacctcgacgtggtgcgtgcggcggattgg
atcatcgacctcggccccgaaggcggcgatgccggtggcctgctcgtgtgcgccggcacc
cccgctgcggtcaaggcgtgcgccgcttcgcacaccggtgcggcgctcaagcaatacgag
gccagcatcggcaagcccgaggccaccgaaggcgtgccgctgcaaacggcactggccgac
cgccgcgccaagcgcacagcgctggcggaagtccagggcgagaacgtcgtgcgcatcgtc
cacgcgcacgagcacaacctcaagggcctgaacgtcgatattccgcacggcaagttcaac
gtggtgacgggcgtgtcgggttcgggcaagtcgacgctggcgttcgacatcctcttccac
gaggggcagcgtcgctatcttgaatcgctcaacgcgtatgcgcgttccatcgtgcagcca
gcggggcggccggaagtcgatgccgtctacggcattccgcccaccgtggccatcgagcag
cgcctgtcgcgcggcggccgcaagagcacggtggcgaccacgtccgaggtgtggcacttc
ctgcgcctgctgtatgtgaagctgggcgtgcagcactgcatccacgacggcacgccggtg
tcggcgcaaagcccggaggcgatcttcgcgcaactcatgcgggatcatcgcggccagcac
atcggcctgcttgcgccgctggtcgtgaaccgcaagggcgtctataccgacctggccaag
tgggccaaggcgcgcggctatacgcatctgcgcgtcgatggcgagttcctcaccgtcgac
ccgtggccgcgcctggaccgcttccgcgagcacacgctggaactgcccgtcggcgacatc
gttgtcgccccggaaaacgaagccgcgctgcgtgccttgatggaacaggcgctggaatac
ggcaagggcatcatgcacgtgctcgcgccgctcgacggcctgcagcacgccatgcacaac
ggcgacacggcgcatgtcggcagcgtcaaggtgttctcgaccaaacgcgcctgcgcgacg
tgcggcaccagctaccccgagctggatccgcgcatgttctcgtacaacagcaagcacggc
tggtgcgcgagctgcgtcggcacggggttggcgttgacgcgcgagcagcgtgccgcgttt
gacgatacggtgctcggcggcgacgaccgcggccgcgagcagacactgccctcggaggaa
gtcgatccggaaggcatgacggacctgccctgccccgactgccacggcacacgcctgaac
ccgacggcgcgcgcggtgacctttgccgacaagcccatcgtcgacattgcgcagtggacg
gtcagccagacccgccgctgggtcgagggcttggacctgaccggccgcgacgccgacatc
gcccgcgacgtggtggccgagattcacagccgtctgtcgttcctggaggaagtcggcctg
ggctacctgagcctggatcgtgccgcgccgagcctgtcgggcggcgaagcccagcgtatc
cgtctggcggcgcaactcggcagcaatctgcagggcgtctgctacgtgctggatgagccg
accatcggcctacatccgcgcgacaaccagatcctgttggacgcgttgcgcaagctgggc
gacaagggcaacacgctggtggtggtcgagcacgatgaagacaccatccgccgcgccgac
cacatcatcgatatcggcccgggtgccggcaagcgcggcggcacgctcgtcgcgcaaggc
ggcgtggcagaccttgcagcgcagccggattcgctcacgggccgattcctgtcgcagccg
atcgagcacccgctgcagccgcgccgccaggtgattgcgccgcgtgccggcaagcaagcc
gtgccggagcaatggctgacggtgcacggcgccaagctgcacaacctgcgcaacgtgacc
gcaacgatgccgctgtcgcgtctggtggcgattacgggggtgtcaggctcgggcaaatcg
acgctggcgcgcgatgtgttgatgacaaacctgctcgatgcggtcggccgttcggtgctg
tcttcgccggcaacccgccgcgcacgcaaggccgcgcaggctgagacgcctgaggcgaag
atgccgcgcaagctcgacgtcaaacacgactggcatggctgcgacagcgtcaccggctgg
gaaaccatcgaccgcgtgctggaagtcgaccagacgccgatcggcaagacgccgcgctcg
tgccccgccacgtacatcggcgtgtgggacaccatccgcaagctctttgccgacacgctg
gaggcccgcgcacgcggctacaccgcctcgcgcttctcgttcaacaccggcgacggccgc
tgccccgcctgtgaaggccagggcgtgcgcaccatcgccatgagcttcctgcccgacgtg
aaagtcgcatgcgacgtgtgccacggccagcgcttcaaccccgagacgctggccgtcacc
tggcgcggcaagaacatcggcgaagtgttgaccatggagatcgacgaggcggtcgaattc
tttggtgcgatgaacagcatcgcccacccgctgcaactcatgaaggacgtgggccttggc
tacctgacgctgggccagccgtcgcccacgctatccggcggcgaagcacagcgcatcaag
ctcgtcacggaacttgccaaggtgcgcgacgacatcacacgccgcggccagaaggccccg
cacacgctgtacgtgctggacgagccgaccgtgggcctgcacatggccgacgtggccaag
ctgatccgcgtgctgcatcggctggcggacggcggccacagcgtgatcgtgatcgagcac
gacctcgacgtgattgccgaggcggactggattctcgatctcggcccggaaggcggcgac
ggaggcggcacgatcgtcgcggcttgcgggccggaggcgctcacgcgggtgaaagccagc
cataccggtgcggcactggtgccggtgctggcgcgtggcaagcaggtcgatccgagcaag
gaaggcgcgacggtctag
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