Rickettsia montanensis: MCI_05115
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Entry
MCI_05115 CDS
T01784
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rmo
Rickettsia montanensis
Pathway
rmo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rmo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MCI_05115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rmo03021
]
MCI_05115
03400 DNA repair and recombination proteins [BR:
rmo03400
]
MCI_05115
Enzymes [BR:
rmo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MCI_05115
Transcription machinery [BR:
rmo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MCI_05115
DNA repair and recombination proteins [BR:
rmo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MCI_05115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
Peptidase_M23
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AFC73845
UniProt:
H8KBX9
LinkDB
All DBs
Position
906375..910493
Genome browser
AA seq
1372 aa
AA seq
DB search
MSVVNFYGQLSNTQQFDQIRINIASPDQVRSWSFGEVTKPETINYRTFKPEKDGLFCARI
FGPVKDYECLCGKYKRMKNRGITCEKCGVEVTVSRVRRERMGHIELAAPVAHIWFLKSLP
SRISTLLDMTMRDVEKILYFENYVVVDPGLSILQKGELLTEEELQKAKDKYGEDAFTASI
GAEVIQQMLKELDFSKLKQELYEELQTTSSEVKKKKLVKRLKLVEDFLESENKPEWMIMD
VLPVIPPEIRPLVMLDGGRFATSDLNELYRRVINRNNRLKKLIESKAPDIIVRNEKRMLQ
EAVDALFDNGRRGRAAKNANKRPFKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPE
LKLHQCGLPKKMALELFKPFIYSKLELYGIATTIKAAKRMVEAEKSEVWDVLEEVIREHP
VLLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCTAFNADFDGDQMAVHIPLSIEAQLEA
RVFMMSTNNILSPANGRPIIVPDKDIVLGLYYLTLAFDNEVGAGMMFSDLAEMEHALYNK
FITIHTKIKYRRNQLNAEGKMVPVIIDTTYGRLMVGELLPSNPNIEFKFINKQLTKKDIS
LVIDLVYRHCGQKATVIFADQLMKLGFKYACSSGISFGMDDMVVPESKSTHINETQLEIK
EFEQQYSNGLITYGEKYNKVVDAWSRCTDRVANDMMKEIATPPVNDDPNHQKINAIYMMA
ISGARGSFQQIKQLGGMRGLMTKSNGQIIQTPIISNFKEGLTEFECFNSANGMRKGQIDT
ALKTASSGYLTRKLVDVAQDCIITEKDCGTDKGIEVKSVIEGGEVIVPLAEKILGRTAAI
DIFHPVTNDLILNKGELINEAKLEQIESAGLDRIMIKSVLTCESTTGICSICYGRDLATG
TLVSEGEAIGVIAAQSIGEPGTQLTMRTFHIGGAATKGAEVSSVDASYDAKVKIISRNVV
INSEERKIVMSRNCELLLLDNNGNEKARHKIPYGARLLVDDGDMVIKTQKLAEWDPYTIP
IITEKSGKVLFKDMVEGISIRDVTDEATGIPSKVIIESKQYSRGAELRPRIQLLDAKGEV
ITLSNGLEARYYLPVGAVLSVEDGVQISVGDIIARIPKESTTTKDITGGLPRVAELVEAR
RPKDHAVIAEIDGRVEFGKDYKSKRRIIIHPIDETMSIEYMVPKGKHVVVNEGDFVKKGD
LLIDGNLVLQDILKVMGVEVLANYIVKEVQAVYRLQGVKIDDKHIEVIIRQMLQKVEVTD
SGGTTLLVGEKIDRHEFDEINEKAMKNGLKPAEAQLILQGITKASLQTRSFISAASFQET
TRVLTEAAIAGKVDKLRGLKENVIVGRLVPAGTGYFMDKMRKAAVKLDEENV
NT seq
4119 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtagtaaatttttacggacaattaagtaatactcaacaatttgatcagataagg
attaatatagcaagtcccgatcaggtacgttcgtggtctttcggtgaagtaacaaaacct
gaaacaattaactatcgaacttttaaacctgagaaagatggtttattttgtgcaagaatt
tttggtccggtaaaagattatgaatgtctctgcggtaaatataagcggatgaaaaaccgt
ggcattacgtgtgagaaatgcggcgttgaagttacggtttctagagtaagacgtgaaaga
atggggcatattgaacttgcagctcccgttgctcatatttggtttttaaagtcgctacct
tcaagaattagtacacttcttgatatgacaatgcgagatgtagaaaagattctttatttt
gaaaattatgtagtagttgacccagggctatcgattttacaaaaaggcgaactcttaaca
gaggaagaattacagaaagcaaaagataagtacggtgaagatgcatttactgcctctata
ggtgcagaagtaatacaacaaatgcttaaagagcttgatttttcaaagttaaagcaagaa
ttatacgaggaattacaaaccacttcttcagaagtcaaaaagaaaaaattagtaaagcgt
ttaaaattagtagaggattttttagagtcggaaaacaagccggaatggatgattatggat
gttttaccggttattcctcctgaaattagaccgcttgttatgcttgacggcggaagattt
gctacttcagacttaaatgaactttatagaagagtaattaatagaaataatcgtttaaag
aaattaatagagtcaaaagctcctgatataatagtcagaaacgaaaaaagaatgttacaa
gaagcggtggatgcgttatttgataacggtcgtcgcggtagagcagcgaaaaatgctaat
aagcgtccatttaagtcattaagtgatatgcttaaaggtaagcaggggcgtttccgtcag
aacttgctaggtaagagggttgattactcaggacgttcggttatcgtggtaggacctgag
cttaaacttcaccagtgcggtttacctaaaaaaatggctctggagttatttaagccgttt
atttattctaagcttgagttgtacggcatcgctacaactattaaagccgctaaaagaatg
gtggaagctgaaaaatccgaagtgtgggacgtgcttgaagaggtaattagagagcatccg
gttttacttaatagggctccgacgttacataggcttggtattcaagcatttgaaccgcta
ttaattgaaggtaaagcgatccagcttcatccgcttgtgtgtactgcgttcaatgcggat
tttgatggtgatcagatggcagtacatatcccgttatcgattgaagcacagcttgaagct
agggtatttatgatgtctacaaataatatcttaagccctgcaaatggtcgtcctatcatt
gtaccggataaagatatagtgcttggtttatattatctaacccttgcatttgataatgaa
gtaggcgcagggatgatgttctcagatttagctgagatggaacatgctttatataataaa
tttataactattcatacaaagataaaatatcgcagaaatcagttaaatgccgaaggtaaa
atggtccctgttatcattgatactacttacggtaggttaatggtcggtgagttattgcct
tctaaccctaatatagaattcaagtttattaataaacaactaactaaaaaagacatatca
ttagttatagatttagtttatcgtcactgcggtcaaaaagctacggtaatttttgccgat
cagctaatgaaactaggttttaaatatgcttgttcttcaggtatttcttttggaatggac
gatatggtagtaccggaatctaagagtactcatatcaacgaaactcagcttgaaataaaa
gaatttgaacaacaatattcaaacggtttaattacttacggagagaaatataataaagta
gtcgatgcttggtcaagatgtaccgatagagtagcaaacgacatgatgaaagagattgct
acgcctccggttaatgatgatccaaatcatcagaaaataaatgctatatatatgatggct
atttctggagcaagaggttctttccagcaaattaagcagctaggcggtatgcggggttta
atgaccaaatcaaacggtcaaattatacaaactcctattatctctaactttaaggaagga
ttaactgaatttgagtgttttaattctgctaacggaatgcgtaaagggcaaatagatacg
gctttaaaaacggcaagttcaggttacttaacaagaaaattagtagatgttgcacaagat
tgtattattactgaaaaagattgtggaactgataaaggaattgaagttaagagtgttatt
gaaggcggagaagttatagtacctttagctgaaaagattttaggtcgtactgctgctatt
gatatatttcatccggtaactaatgatctaattctcaataaaggcgagcttattaatgaa
gcaaagttagagcagattgagtcggcgggactcgacagaattatgataaaatccgtatta
acctgtgaaagtactaccggtatatgtagcatatgttacggtagggatcttgctactggt
acattagtatcggagggtgaagcaatcggggttattgctgctcaatctatcggtgaaccg
ggtacgcagcttacaatgagaactttccatatcggaggagcggcaacaaaaggtgctgag
gtttcttccgtagacgcttcctatgacgcaaaagtgaaaattataagccgtaacgttgtt
attaattccgaagaacgcaaaattgttatgagccgaaattgtgaattattattgcttgat
aataacggtaatgaaaaggctcgtcataaaattccatacggtgctagattacttgttgat
gacggtgatatggtgattaaaactcaaaaactagcagagtgggatccttatactataccg
attatcacggagaagtcaggtaaagttttattcaaagatatggttgagggtatttctatt
cgtgacgtaactgacgaagctaccggaataccgagtaaagttattattgaatcaaagcaa
tattcacgcggtgcagaattacgcccgcgtatacagcttttagatgctaaaggtgaagtt
atcaccttatcaaacggtttagaagctagatattacttgccggttggagcagttttaagc
gtagaagacggagtacaaatatcggtaggtgatatcattgcacgtataccgaaagaatca
accactactaaagatattaccggtggtttaccgagagttgccgagcttgtagaagcaaga
cgccctaaagatcatgcagttattgcagaaattgacggtagagtagaattcggtaaagac
tataaatctaagaggcgtattattatacatccgattgatgaaacaatgtctattgagtat
atggtaccaaaaggcaagcatgttgtagttaacgaaggtgattttgttaaaaaaggtgat
ttattgattgacggtaatctggtacttcaagatattttaaaggtaatgggcgtagaggtt
cttgcaaattatattgttaaggaggttcaagccgtttatcgtctacaaggtgtaaagatt
gatgataagcacatagaagttattatccgtcagatgttacaaaaagtagaggttacggat
tcaggcggaactacgttattagtaggtgaaaaaatagatagacatgaatttgatgagata
aatgaaaaagctatgaaaaacggtttaaaacctgctgaagcacaattaatattacaaggt
attactaaagcttctctgcaaactaggtcgtttatctctgcggcatcattccaagagact
actagagttttaactgaagcagctattgccggtaaagtagataagttgcgaggactaaaa
gaaaacgtgatagttggacgattagtacctgccggaaccggttactttatggataaaatg
cgtaaagcagctgtaaagcttgatgaagagaatgtataa
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