Rhipicephalus microplus (southern cattle tick): 119159435
Help
Entry
119159435 CDS
T07403
Name
(RefSeq) LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein 1-like
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
rmp
Rhipicephalus microplus (southern cattle tick)
Brite
KEGG Orthology (KO) [BR:
rmp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rmp03021
]
119159435
03036 Chromosome and associated proteins [BR:
rmp03036
]
119159435
Transcription machinery [BR:
rmp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
119159435
Chromosome and associated proteins [BR:
rmp03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
119159435
SLIK complex
119159435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
CDH1_2_SANT_HL1
Chromo
Helicase_C
CHD1-like_C
ResIII
HDA2-3
DEAD
Myb_DNA-binding
Motif
Other DBs
NCBI-GeneID:
119159435
NCBI-ProteinID:
XP_037268088
LinkDB
All DBs
Position
1:282709976..282830485
Genome browser
AA seq
1905 aa
AA seq
DB search
MDMSDAESNSSNASESASDSGSCSGSSSAMRSRKSVSASPKLDSSNQTARTGDDDDDRNG
SESGSNQASSSDSESGNSDAESDAPRAPSQQRRVSESSAHDESSRDERRKRPSNSRPTKQ
VWEENPDMYGVRRSGRYRKEPERYTIDESEGSDTKKASRGNAARSRKASADWRSSGNSDS
DDSDAVVRPRKAAPKRAPPPKRQSAASQRRQTNRVNYHSSDESSDEQSSDNDSDDDGKRQ
GTRRAAKTVSYKEQSAEETGSDDLVEIEYDEQAAAAEAPTQETVERVIDHRVGKKGATGA
STTVYAVEEFGDPNAGAAELPDAEKETQYLIKWKGWSHLHNTWESMQTLQEQKVKGLKKL
ENYIKREDELRNWRDNASPEDIEYYECQQELSEELQFKHMEVERIISHAPAKSGEAEQMD
YLCKWDGLPYSDCTWEDGNLIKRKFQHVIDQYHARQKSQKIPSKVCKVLKVRPKFSPLKT
QPSYIGGLQKLELRDYQLEGLNWLANSWCKENGVILADEMGLGKTIQTISFLTYLFNHHA
LYGPFLLVVPLSTMASWQKEFAQWSPDMNVVVYLGDVSSRSMIREHEWCHPGNKRLKFNA
ILTTYEILLKDKGFLGNVSWAVLGVDEAHRLKNDDSLLYKSLFEFDTNHRLLITGTPLQN
SLKELWALLHFIMPLKFDSWEDFEAEHKESADKGYTKLHKQLEPFLLRRVKKDVEKSLPA
KVERILRVEMTSVQKQYYKWILTKNYKALSKGLKGSQSGFINIMMELKKCCNHAMLIRPP
DNPNNLDALQQIIRGSGKLLLLDKLLCRLRETGHRVLVFSQMVRMLDIIADYLQLRRFPF
QRLDGSIKGELRRQALDHFNADASQDFCFLLSTRAGGLGINLATADTVVIFDSDWNPQND
LQAQARAHRIGQKNQVNIYRLVTKNSVEEDIIERAKRKMVLDHLVIQRMDTTGRTVLSKS
NAPSSNTTPFNKEELAAILKFGAEELFKETEEGDDEPQVDIDEILQRAETREEQPSTVGD
ELLGSFKVASFNFTEEEEVGAVSAKGLAEDESSQSKDWDDIIPEADRKKVEEEERQREEL
ELYLPPRSRKSIHQTANSDSEDGRSRRRDRGSGAGSNGSDDDSRPRKRGRPRLIPRDTVK
GFTDAEIRRFIKSYRKFPAPSKRLDAVALDAELQEKPLADLKRLATLLHNGCEQAMKENQ
ASAANTDTPDVNNGGAPGRRRHQRTTFKLSGVSVNAKSVLASYQELSVLDSMLPVSAEER
RHWTLDLPTKDAHFDIPWSVAEDSALLRGIYEHGMGSWESIKMDPNLGLTNKILPDGEEL
KPQCKHLQSRADYLLKLLRRVHARQMALQEGKEKPKRNRKARPEKVHLSKAIVDNDDSND
SDTAMSSKSRKLKVKTEDDSHQNNALAVIDGVAKGLNISPTASVPDAKLGADSGGPKAKR
KKKEKDKVKDGKDKEKKKKKKVGPLSLLHESTGEGAKPKVKKEMPAMHYTANAAPQVIEA
TGDLDMTLFNECKEKMRPVKRALKQLDTPDASMSDDEQVNHTRMCLLKIGEHINECCNEY
SDPEKAKQWRSHLWSFVAKFTELDAKALFRLYRHAQKKNESADRTKDADKKDHEKRPRLH
DEGSQPGSTHSSLHGSGHGSHHGNSGQHGSSSQHGYNQHSGSQYGSSSQHGGQHGIKRHF
EDDHKRPKKRPHEDKPRDKRSDGGGSNSHNKGGGGGAYRDRGSSSSYQKGSNSYSHPPHR
MSFQQGQERWNHENPSSGWDYNKDRYNNDYSKHDPYRHYQGNRIDDQAYKRDKDPRTQHP
DRRYHGGSGGSNFVPYGVPPVAAASVPYAAGYGAVPVPAGAHQPPPPGAMPEHHTSPLGP
YSPYQGHSDSWRRKERTNSGGSGGYPRPPGGGGHFERPTDAPKHV
NT seq
5718 nt
NT seq
+upstream
nt +downstream
nt
atggacatgtcagatgctgaaagcaacagttccaatgcgtccgagagtgcctcggactct
ggatcatgctctggatccagctctgcaatgcggagtcggaaatctgtgtctgcttccccg
aagctagattccagtaaccagacagcgaggacaggagatgacgacgatgacagaaatgga
agcgagtctggcagcaatcaagcatccagctcagacagtgagagtgggaactctgatgcc
gagagtgatgctcctcgtgccccttcccagcagcgacgagtctctgagagctccgctcat
gatgaaagctcgcgggatgagcggcggaaacgacccagcaactcgcgacccacgaagcaa
gtctgggaggagaacccggacatgtatggcgtacggcgatccggccgttatcgcaaggaa
ccagagcggtacactattgacgaatctgagggaagcgacacaaaaaaggcatcccgagga
aatgctgcacgatctcggaaagcctcggctgactggagatcaagtggcaacagtgacagc
gatgacagtgatgctgtggtgcggcctcgtaaagctgcccccaagcgagcacctcccccg
aagcggcagtctgcagcatcacagcggcgccagacaaaccgtgtcaactaccacagctct
gatgagagctctgacgagcaatcatcagataatgatagcgatgacgatggaaagcggcaa
gggactcggcgagctgctaaaacagtcagctacaaggaacagagtgcagaggagactggc
tcagatgacctcgtggagatcgaatatgatgagcaggcagctgctgctgaggccccaact
caggagacagtcgagagagtgattgaccaccgtgttggcaaaaaaggagccacgggtgcc
tcaacgacggtgtatgcagtagaggaatttggggatcccaatgctggtgcagccgagttg
ccagacgctgagaaggaaacacagtacctgatcaaatggaagggctggtcgcacctccac
aacacctgggagagcatgcagacactgcaagagcagaaggtcaagggtctcaagaagtta
gagaactatattaagcgtgaagatgagcttcggaactggcgtgacaatgccagccccgag
gacattgagtactatgagtgccagcaggagctttccgaggagttgcagttcaagcacatg
gaagtggaaaggattatttcgcatgccccggcaaaaagtggagaggctgagcagatggac
tatctgtgcaagtgggatggcctgccctactctgattgcacctgggaagacggtaacctg
atcaagcgcaagttccaacacgtcattgaccagtaccacgctcgccagaaatcgcagaag
atacccagtaaagtgtgcaaggtgctgaaggtgcgcccaaagttttcccccctgaagact
cagccatcgtacattggtggactccagaaacttgaactcagggactaccagttagaaggc
ctgaactggctggccaactcgtggtgcaaggagaatggagtgatcctggcggatgagatg
ggcttgggaaaaacaattcagacgattagctttcttacgtaccttttcaaccatcatgcc
ctctatgggcctttcctgctggttgtgcctctctccacaatggcatcctggcagaaggag
tttgctcaatggtcgcctgacatgaatgtcgtcgtctatcttggagatgtttcctctcgc
agcatgattcgtgagcacgagtggtgtcatcccggcaacaagagactgaagttcaatgca
attctgaccacgtatgagatccttctgaaggacaaaggcttcttgggcaatgtcagctgg
gctgttcttggagttgatgaggcccacaggctcaagaatgacgactcccttctgtacaag
tcactctttgagtttgacacaaatcatcgcctcctcattactggcacacctctgcagaac
tctttgaaggaactctgggcactgcttcacttcatcatgccactaaagtttgactcttgg
gaggactttgaggcagagcacaaagagagtgctgataagggctacacgaagctgcacaag
cagcttgagccattcctactgcggcgcgtcaagaaagatgtggagaagtcgctgcccgct
aaagttgagcgcatccttcgtgtggaaatgaccagtgtgcagaagcagtattataagtgg
attctgacaaaaaactacaaggcactttccaagggcctcaagggatctcagtcgggtttc
attaacatcatgatggagctcaagaagtgctgcaaccatgccatgcttattcgaccacct
gacaatcctaacaacttggatgctctgcagcaaatcatccgaggcagtggcaagctgctg
ctgctagacaagctgctgtgccggctgcgggaaacaggccaccgagtgctggtgttctcg
cagatggtgcgcatgctggacattatagccgactacctgcagctgcgcaggttcccattt
cagcgccttgatggctccatcaagggcgagcttcggcggcaagctcttgatcacttcaat
gccgatgcatcacaggatttctgtttcctgctctccacgagggcgggtggtctgggtatc
aaccttgctactgctgacacagtcgtcatctttgacagcgattggaacccacagaatgac
ctccaggctcaggccagggcccacagaattggccagaaaaatcaggtgaacatctaccgt
cttgtgactaaaaatagcgtggaggaagacatcattgaacgtgcaaaacggaaaatggtt
ttggaccatctggtcattcagagaatggacaccactgggcgtacagtgctctctaagagc
aatgcaccatctagcaacacaactcctttcaacaaagaagaattggcggccatattgaag
ttcggtgctgaggagctcttcaaagagactgaggaaggagacgacgagcctcaggttgac
attgacgaaatccttcaacgagcagagaccagagaagagcaaccgtctactgttggagat
gaactcctaggttcttttaaggttgctagtttcaatttcaccgaagaagaggaagtggga
gctgtgtctgccaagggcttggcagaggacgagtcttcccaaagcaaagactgggacgac
atcattcctgaggctgaccgcaagaaagttgaggaggaggagcgacaaagggaggaactt
gagctgtacctgcctccacgaagtcgcaagtctatccatcagactgccaattcagacagt
gaggatgggcgatcacgaaggagagacaggggctctggtgctggctcaaatggatcagac
gacgactctcgtccacgaaagcgtggccgcccacggctcattccacgcgatacggtcaaa
ggcttcacggatgctgagattcgccgtttcatcaagagctaccgcaagttccctgcccca
tccaaaagactcgatgcagttgcactggatgctgagcttcaagagaagccgctggccgac
ctgaaacggttggcgaccctgttgcacaatggctgtgagcaggccatgaaagagaaccag
gcatctgccgcaaacactgacactccagatgtcaacaacggaggtgcaccggggcggcgg
agacaccagcgcacgaccttcaagctgtctggcgtgtcagtgaatgccaagtccgtgctg
gccagctaccaagagctcagtgtgctagactcaatgctacctgtgagtgcggaagagaga
aggcactggacactagatttgcccactaaggatgcccactttgacatcccatggtctgtt
gctgaggattctgctctgctcaggggcatctatgagcatggcatgggtagttgggaatcc
attaagatggacccaaatttgggtctcactaacaagatccttccggacggtgaggagctg
aagcctcagtgtaagcacctgcagagtcgtgccgactatcttctcaagcttttgcgcagg
gtgcacgctcgacaaatggcactccaagaaggaaaggaaaagccaaagcgcaaccgaaaa
gcacgccctgagaaggtccatctcagcaaagctattgttgacaatgatgacagcaacgac
agtgacactgctatgtcttccaaatcacggaaattgaaagtaaagacagaagatgacagc
caccagaacaatgccctagcagttattgatggtgtggcaaagggtctcaacatcagcccc
accgcgtctgtgcccgatgccaagcttggtgctgacagtggaggcccaaaggcaaagcgg
aaaaagaaggaaaaggacaaggtcaaggatggcaaggacaaggaaaagaagaagaagaag
aaggtcggtccactaagcctacttcatgaaagtacaggggaaggtgcaaaacccaaggtg
aagaaagagatgcccgcaatgcactatactgccaatgctgcaccgcaagtcatagaagcc
actggtgacctggacatgacgctattcaatgagtgcaaagagaagatgcggccagttaaa
cgagcacttaaacagctggacacgccagacgcttcaatgagtgatgacgagcaagtaaac
cacacgcggatgtgtctgctgaaaattggtgaacatatcaatgaatgctgcaatgagtac
tcggacccagaaaaagcaaagcaatggcgttcccatctgtggtcatttgtcgccaagttc
acggaactggatgccaaggcattgtttcgactgtaccggcacgcacaaaagaaaaatgaa
agtgctgatcgcaccaaggacgccgacaagaaggatcacgagaagaggccgagactacac
gacgaggggagccaacctggcagtactcacagcagccttcatggaagtgggcatggaagt
caccatggaaacagtggacagcatggaagcagcagccagcatggttacaatcagcacagc
ggtagtcagtatggcagcagtagtcagcatggcgggcaacatggcatcaagaggcacttc
gaggatgaccacaaaaggcccaaaaagcgaccacacgaggacaaacccagggacaaaaga
agcgacggtggtggcagcaacagtcacaacaaaggtggtggtggtggtgcgtatcgtgac
cgaggcagcagcagcagctaccaaaaaggctccaacagctacagccacccgccccaccga
atgtcatttcagcagggtcaagaacggtggaaccacgagaacccttcatccggctgggac
tataataaagatagatataacaatgattacagcaagcatgacccataccgtcattatcag
gggaatcgcatagatgaccaggcctacaaaagagacaaggatcccagaacacaacatcct
gacagaaggtaccacggtggaagtggaggcagcaactttgtgccatatggtgtgccccca
gtagcagcggcatcagtaccctatgcagctggttatggagcagtaccggtgccagccggc
gctcatcagccaccaccaccgggcgcaatgcctgaacaccacacaagccctttgggcccc
tacagcccttaccaagggcactcagactcgtggaggcggaaagaacgtacgaacagcgga
ggaagtggtggctacccgcgacctcctggtggcggaggccactttgaacgcccaaccgat
gcgcctaagcacgtatag
DBGET
integrated database retrieval system
