Rhipicephalus microplus (southern cattle tick): 119160937
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Entry
119160937 CDS
T07403
Name
(RefSeq) DNA mismatch repair protein Msh6-like
KO
K08737
DNA mismatch repair protein MSH6
Organism
rmp
Rhipicephalus microplus (southern cattle tick)
Pathway
rmp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rmp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
119160937
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rmp03400
]
119160937
DNA repair and recombination proteins [BR:
rmp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
119160937
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
PWWP
MutS_II
MUM1-like_PWWP
PilJ
Motif
Other DBs
NCBI-GeneID:
119160937
NCBI-ProteinID:
XP_037269117
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All DBs
Position
2:63658079..64263878
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AA seq
1177 aa
AA seq
DB search
MAKNTLFSYFTKVPKHDSGTSANAEGERSSLGATGVSCPYRLHDLIWAKLEGYPYWPAIV
SAPPGEASFLKEHSAQQSVHVNFFDSCPSRAWVKVRLTKPFKGAADPPARSTDARWIHAV
AEAEKALSLDPSDRAGLLPATNGSAAHNSSDEEDQQPSPKKRCIISDSSSEEEFHPGQDD
FESDSDSISSGLDEDTISDPAPESPEQSPPRKRPASKLPAVTPKVKKPSIVAAVTSGTWA
HLSYDFLKEGKRRDAAGRLASHPEFNPRTLLIPDSFKAKLTPAMRQWWDMKAEHLDVVLF
FKVGKFYELYHMDAVIGVEQLGLVFMKGDFAHSGFPEIAYGRYSEALIQKGYKVARVEQT
ETPQMMEERCRKMHRPSKFDRVVRREICRITCLATRTFGPQDGQLCNPELSYLFAIVHGQ
ESANTDFGICFVDTSVGKFHLGQFSDDSFCSKLRTAVSHHPPAQVLYQSDPALPAGLRQV
FEGPLHSVPQQALRPGKELWDVPHTLRRLREGAYFGDKYPAVLQSFLDPADSTNLTPQEN
GCLALKALGACVWYLSKSLIEEEVLTMCRFEKYVPPQSSDTRQDLNNLILDGVCLQNLEV
VRNSSRGTEGTLLATMDFCCTPFGKRLFQQWLCSPPRRVDVIEDRQRAVDDLLRFPHEVQ
KTRELLCSLPDLERLLARIHSQSLARNSSSHPDQRAILYEDTAYNKRKIANLLQALGGFQ
KAAQVAPLWADALSSLTSHTLAKCLSVGPEAGQFPDLADALEFFEKAFDHEQARKEGRVT
PMSGVDDEYDEAMQSVKEANKALQEYLAQQSQRFRCKAAFVGSGKNRFQIEVPESCARFV
DSSYQLQGQRKGYRRYYTEDVKRLAAELVSAEEAQETALKDIMRRIFEHFDCRRSQWEAA
IHCVALLDGLLSLASYSGSLTDAACTPRFLSHQSQPCLVVKSGRHPCLLEHLGASSLIPN
DLSLGGAKDPVLTLLTGPNMGGKSTLMRQAGLLVIIAHMGARVPADACELTLVDRIFTRL
GASDRITSGESTFFVEVNETSAILQHATQHSLVLLDELGRGTSTHDGMALAHAVVQELAS
TIRCCTLFSTHYHHLVQNFRLHPAVQLAHMACMVEDENAVDPTQETIVFLYKCVPGPCPK
SYGFNAAKLAGVPQQVIRTAYEKSSRLEKCIQVACAC
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaaacactcttttttcatacttcaccaaggtcccaaaacacgacagtggtact
tcggcgaatgcagaaggtgaaaggtcgtcgctgggagcaactggggtgtcctgtccttac
cgtcttcatgaccttatttgggccaaactggaaggctatccctattggccggccattgta
tcagcacctcctggggaagcctcatttctgaaagaacacagtgcacaacaatcggtgcac
gttaatttctttgactcatgcccatctcgagcatgggtcaaggtaaggctaaccaagccg
ttcaaaggtgcggctgacccacctgcccgttctactgatgcacgttggatccatgctgtg
gccgaggctgagaaggcactctcgctggatccctctgaccgtgccggccttcttcctgca
acaaatggctcagctgcccacaacagcagtgatgaagaggatcagcagccatcacccaag
aagcgatgtattatctcggacagcagctcggaggaagagtttcatccaggccaagatgac
tttgaaagtgattctgactcaattagcagtggtttggatgaggacacaatttcagacccg
gcacccgagtcaccagaacaaagcccccctcgcaagcggcctgcctcgaagttgcctgca
gtcacccctaaggtgaagaaaccttctattgtggccgctgtgactagtgggacatgggca
catctctcttacgacttcctcaaagagggcaagcgcagggatgctgctgggcgcttggcc
agccacccggagttcaatccacgcacactgctcatcccagacagtttcaaggccaagctg
acaccagccatgcgtcagtggtgggacatgaaggcagagcatttggatgtggttctcttc
ttcaaggtgggcaagttctacgagctgtaccacatggatgcggtgattggagtggaacag
cttggtctcgtcttcatgaagggtgattttgcccactctggttttccggaaattgcttac
ggccgctactccgaggcccttatccagaagggttacaaggtggcacgagtggagcagact
gagaccccccagatgatggaggaacgatgccgcaaaatgcaccgtccaagcaagtttgat
cgggtggtccggcgagagatatgtcggatcacatgtctggcaacacgaacctttggacca
caggatgggcagctgtgcaatcctgagctatcttacctctttgccattgtgcatggccag
gaatcggctaacacggactttggcatctgctttgttgacacctccgtgggcaagtttcat
cttggccagttcagcgatgactccttctgctccaagctgcgcacagctgtgtcccatcat
ccacctgctcaggtgctctatcagagtgaccccgcgctgcctgctggacttcgtcaagtg
tttgaggggcctcttcactcggttcctcagcaagcgctccggccaggaaaggaactctgg
gatgtgccacacactctgcggcgtttgcgagagggtgcctattttggtgacaaataccct
gctgtcttgcagtcatttttagatccagctgactccacgaacttgactccccaggagaat
ggctgtcttgctctaaaagccttgggtgcctgtgtttggtacctgtccaagtctctaatt
gaagaagaggttctgactatgtgccgcttcgagaagtatgtaccacctcagagcagtgat
accaggcaggacctgaacaacctgatcctcgatggtgtgtgcctgcaaaatctggaggtg
gtgcgaaattcatctcgtggcacggagggaacactgctggcaacgatggacttctgctgc
accccatttggcaaacggcttttccagcagtggttgtgctcccctccaaggcgtgtggat
gtaattgaggaccggcaacgtgcagttgatgacctgctgcggttccctcatgaggttcag
aagacacgtgagctgctgtgctcattacccgaccttgagaggctgcttgccaggattcac
agccagagccttgcacgaaacagttcttcccacccagaccagcgtgcaatcctgtacgag
gatacagcctacaacaagcgcaagatcgccaatctccttcaggcccttggaggattccaa
aaggctgcacaagtggcccccctctgggcagacgcactgtcgtcactgacatcgcatacg
ctggccaaatgtctttcagtgggccccgaggctggccaatttccagacttggctgatgcg
ctcgagttttttgagaaggctttcgaccatgagcaagctcggaaggaggggcgagtgacg
cccatgtctggtgtagatgacgagtatgatgaggccatgcaaagcgtcaaggaagcgaac
aaggccctgcaggaatacctggcccagcagagccagcgcttccgctgtaaggcagctttc
gtgggatcaggcaaaaaccgctttcagatcgaagtgccggagtcatgtgcccggtttgta
gactcctcgtatcagctgcagggccagcgcaagggctacaggcgctactacactgaggac
gtgaagcgacttgcagcagagctggtttccgccgaagaggcccaggaaacggccctcaag
gacatcatgcgtcgcatcttcgaacactttgactgcaggcgaagccagtgggaggccgcc
attcactgtgtggccctgctggatggcctgctgtcgctggctagctatagcggctcactc
accgatgccgcctgcacaccacgttttctgtcgcaccagtcccagccgtgcctggtggtc
aaatccgggcgccatccttgcctgcttgagcacctcggtgctagcagcctcatcccaaat
gatctgtctctcggaggagccaaggatcctgtgctgacccttctaactggacccaacatg
ggtggtaaatccactctcatgcgccaagctggtctgcttgtaattattgcccacatggga
gctcgtgtgccagcagatgcctgtgaattgaccctcgtcgaccgcatcttcactcggttg
ggagctagtgaccgaatcacttctggtgagagcaccttctttgtcgaagtgaacgagact
tcagcaatcttgcagcatgccacccaacactccttggtgttgcttgatgagcttggccgg
ggtacgtcgacgcacgatggcatggccctggcgcatgcagtggtccaggagctagcatcg
accatccgctgttgcacgttgttctcgacccattaccatcacctcgtgcagaacttccgg
ctccacccggcagtgcagctggcacacatggcttgtatggtggaagatgaaaatgcagta
gacccgactcaggagaccattgtattcctgtacaagtgtgtgccaggcccctgccccaag
agctatggcttcaatgctgccaagttggcaggtgtcccacagcaggtgatcaggacagcc
tacgagaaatctagccggcttgaaaaatgcatccaggtggcttgcgcttgctga
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