KEGG   Rhipicephalus microplus (southern cattle tick): 119161134
Entry
119161134         CDS       T07403                                 
Name
(RefSeq) spliceosome RNA helicase DDX39B
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
rmp  Rhipicephalus microplus (southern cattle tick)
Pathway
rmp03013  Nucleocytoplasmic transport
rmp03015  mRNA surveillance pathway
rmp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rmp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    119161134
  09122 Translation
   03013 Nucleocytoplasmic transport
    119161134
   03015 mRNA surveillance pathway
    119161134
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rmp03019]
    119161134
   03041 Spliceosome [BR:rmp03041]
    119161134
Enzymes [BR:rmp01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     119161134
Messenger RNA biogenesis [BR:rmp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     119161134
Spliceosome [BR:rmp03041]
 Complex C
  Other components
   EJC/TREX
    119161134
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    119161134
SSDB
Motif
Pfam: DEAD Helicase_C ResIII Cas3-like_C_2 CMS1
Other DBs
NCBI-GeneID: 119161134
NCBI-ProteinID: XP_037269380
UniProt: A0A6M2CX46
LinkDB
Position
2:complement(111753082..111775982)
AA seq 421 aa
MADNDLLDYEDEDDQDQAVGESIPDVKKPTGGYVSIHSSGFRDFLLKPELLRAIVDCGFE
HPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQLDPIEGQVSVLVMCHTRELA
FQISKEYERFSKYLPSVRVGVFFGGMNITNDEKVLKSSCPHVVVGTPGRVLALVRSRKLQ
LKYIKHFVLDECDKMLEQLDMRRDVQEIFRNTPHEKQVMMFSATLSKDIRPVCLKFMQDP
MEVYVDDEAKLTLHGLQQYYVKLKDNEKNRKLFELLDLLEFNQVVIFVKTVQRCMALAQL
LVEQNFPAIAIHRAMTQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPE
DSDTYLHRVARAGRFGTKGLAVTFVSDEQDAKTLNEVQDRFDVNISELPDEIDISSYIEG
R
NT seq 1266 nt   +upstreamnt  +downstreamnt
atggccgacaacgacttgttggactacgaggacgaagatgatcaagaccaggccgtgggg
gaaagcatccccgatgtgaaaaaacctaccggaggctatgtatccattcacagctcagga
ttcagggatttcctccttaagcctgaactcctgcgcgccatcgttgactgcggcttcgaa
catccatccgaagtgcaacacgagtgcataccccaggcaatcctgggcatggacatcctg
tgtcaggccaagtctggtatgggaaaaaccgctgtgttcgttctggcgaccctgcaacag
cttgaccctatcgaaggccaggtgtctgtgctggtgatgtgccataccagagagctggcc
ttccagatctcaaaggagtacgagcggttctccaagtatctgccgtcggtgcgcgttggc
gtcttctttggcggcatgaacattaccaatgatgagaaggtgctcaagagcagctgcccc
catgtcgtggtgggcacacctggcagagttctggcccttgttcggtcccgcaaactgcag
ctgaagtacatcaagcactttgttctggacgagtgtgacaagatgctcgagcaactcgac
atgcgtcgggatgtccaggagatttttcgcaacactcctcacgagaagcaggtcatgatg
ttcagcgctacgctgagcaaggatatcagacctgtgtgcctcaagttcatgcaagaccca
atggaggtttacgtcgatgatgaagctaagctgacgctgcacggtctccagcagtactac
gtgaaactgaaggacaacgaaaagaaccgcaaactgtttgagctgctcgacctccttgag
ttcaaccaggtggtcatctttgtgaaaacagttcagcgttgcatggcgctcgcccagctg
ctggtagaacaaaactttcctgccattgccatccatcgggccatgacccaggaggaaaga
ttatctcgctatcagcaattcaaggacttccagaagcgaatccttgtggccacaaacttg
tttggacgagggatggacattgagagggtcaacatagtttttaactatgatatgcctgaa
gactcggacacctacttgcacagggttgctcgagctggacgcttcggcaccaaggggttg
gcagtgacatttgtctctgatgagcaggatgcaaaaaccttgaatgaagtgcaagacagg
tttgacgtcaacatctctgagctgcctgatgaaatcgacatttcctcctacattgaaggc
cgctaa

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