Rhipicephalus microplus (southern cattle tick): 119161438
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Entry
119161438 CDS
T07403
Name
(RefSeq) collagen alpha-2(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
rmp
Rhipicephalus microplus (southern cattle tick)
Pathway
rmp04512
ECM-receptor interaction
rmp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
rmp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119161438
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
119161438
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rmp04147
]
119161438
00536 Glycosaminoglycan binding proteins [BR:
rmp00536
]
119161438
Exosome [BR:
rmp04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
119161438
Glycosaminoglycan binding proteins [BR:
rmp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119161438
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
119161438
NCBI-ProteinID:
XP_037269796
LinkDB
All DBs
Position
2:168524529..168624943
Genome browser
AA seq
1772 aa
AA seq
DB search
MPRPPGRDKGAPPRLTAAASALGLTLVLLLHLPSGADAAACKGCSIPPCLCKGEKGAVGH
PGLPGSSGTEGAPGDLGPLGPTGRRGERGLTGDTGAIGPKGIRGEPGAPGFPGRPGAPGK
PGLDGLFGEPGIPGCNGSKGLLGPHGPAGGWGPPGPRGPRGDYGPKGLPGDGGINSLGIR
GDPGDDGRPGSQGAPGFPGFHGEKGVRGDSGPAGRSGPPGAPGPKGVQGDDAQGDKGPKG
EPGLPGDRGAPGDSYFASGLPTVQQIPGDRGPKGEKGDVGSKGERGSRGVDGEAGLPGSD
GFKGEKGDLGEEGPRGKRGKEGLEGPAGEKGQKGEPGFTGIDGGAGDTGEAGEKGRPGNY
GRQGPPGPPGPTIPIGSPIPGPRGPQGAPGDTGFPGRDGEKGATGAMGYRGIVGGPGVPG
EEGEPGPRGIAIKGEPGEDGYPGLPGLQGQQGLPGPQGPVGDKGQPGLTVIGAPGEEGRP
GRDGRPGIPGVRGDPGPPGDQGTPGRGVARPGPDGPIGLRGPPGDQGIPGRPGTPGADGR
PGPRGDDCGYCPPGIPGDRGAPGEDGRPGPDGSMGFPGTTGPSGVKGDRGYPGARGIPGL
PGRDGEPGWDGQKGEKGLPGEYIFPPGPLPPGSIKGEKGEPGEYGPRGLSGREGNPGLMG
QPGTAGGKGDQGDFGDPGYRGSDGQEGFPGLAGRKGEAGDNYIGEKGDDGEPGEPGDMGP
TGPPGEMGDPGLPVNIPDNLTHLMGPKGQPGLPGPNGREGPKGDKGSPGYDGLPGRQGEK
GDHGTPGYSQQGPDGLKGYPGLAGDQGPSGRRGTPGTVGERGYDGRPGPKGARGRPGSGK
GTGPQGLPGILGLKGEQGESGYRGAPGPAGEPGFTGLKGQRGEPGYVGYAGPKGVKGDAG
DAGIGTQGPPGPPGYDGQKGERGLPGIPGTDGFPGGPGFKGEAGAPGAPGPRGRDGQPGT
RGAPGTPGLEGYPGAKGRKGEAGDFGQPGWDGIAGEPGFPGLKGAKGERGLSGLPGYPGL
PGRPGFPGERGELGYPGLPGLKGDRAQRGIRGDDGYPGLDGAPGPKGPVGFPGLPGRKGE
RGEPGRALGAPDGLPGEPGPRGYDGFPGLPGFKGEAGNPGLPGPPGLEGEPGFPGVVGLD
GANGFPGLPGLPGADGFPGLPGFDGLKGDSGFAGRPGSTGPPGPPGLPGPPGFDGKPGIK
GETGEPGYPGLSTFEISKGDKGEPGQPGPPGIRGLPGEDGFPGLPGAKGQVGEPGFDGAP
GIAGRPGPKGYPGNPGAPGPDGAPATDVYPGPKGDEGNPGPPGFPGIPGLKGEAGDPGPD
GPDGPPGYPGIPPIGFKGEQGDAGVSGPPGTPGLIGSPGQPGYPGIPGLKGLRGDDGLPG
PFVPGPPGLPGPRGQDGQRGYRGEKGAPGESGFPGFPGLKGEMGEPGLPGPPGRPGVNGT
KGAKGQRGSSDAPVDYRPQGFPGEPGYPGANGLPGLPGDQGFPGPNGEPGDYGLPGFPGL
PGYSGPRGLPGDEGFQGLPGFPGEPGTPGRPGNRGAPGGPARSRGYFFTRHSQTSRIPEC
PRGTHPLWSGYSLLYILGDEKAHGQDLGSAGSCLRRFSTMPFLFCSLNNVCNFASRNDYS
YWLSTPEPMPMAMTPIVGRDIQKYISRCSVCESSTQVIAIHSQTLEVPECPEGWDGVWSG
YSFFMNTDSGAEGSGQPLVSPGSCLEEFRPNPFIECHGHGRCNYYTTAFSYWLATIERHD
MFRPPDPQTLKAGDLRTRVSRCKVCRRQVIVP
NT seq
5319 nt
NT seq
+upstream
nt +downstream
nt
atgccgaggccccccggcagggacaaaggcgctccgccgcggctgaccgctgccgcatct
gcgctcggcctcacactcgtcctgctactacacctgccgtccggcgccgacgctgcggcg
tgcaaaggatgctcaattccgccatgcctgtgcaaaggtgaaaaaggagccgtgggccac
cctggccttcccggctcgtcgggcaccgagggagcgccaggagaccttggtcccctggga
ccgaccggtcgccgaggggagagaggtttgacgggagacaccggagccatcggacccaaa
ggaattcggggtgaaccaggggcaccaggattcccaggaaggccaggtgcaccgggaaaa
ccaggtctcgacggtctgtttggagagccgggaataccgggctgcaacggaagcaagggt
cttctcggaccacatggtccagccggtggctggggtccgccgggacctcgtgggcctcgc
ggagactacggacccaagggtttgcctggagatggtggaataaattctctgggaattcgt
ggagacccaggagatgatggaagaccaggctctcagggcgcacctggtttcccaggtttc
catggcgagaaaggtgtaagaggagacagtggaccagcgggaaggtcgggccctccagga
gctcctggtcccaaaggtgtccaaggtgatgacgcgcaaggtgacaagggacccaaggga
gaaccaggtcttcctggagatagaggtgcccctggtgactcctacttcgcttctgggctg
ccaacagttcagcaaatccccggtgacagaggaccgaagggtgaaaagggcgatgttgga
agtaaaggtgaacgtggatcacgtggagtggatggagaagctggcctgcctggcagtgac
ggattcaagggagaaaaaggagacctgggcgaggaaggtccaaggggaaaaaggggaaaa
gagggactcgagggcccagccggagagaaaggacagaaaggagagccaggattcactgga
atcgatggtggtgctggtgacacgggagaagcaggagagaaaggaaggcctggaaattac
ggacgacaaggaccaccgggccctcccggtccgaccataccaatcggatcgcccataccc
ggacccagaggtccccaaggcgcacctggtgatacgggttttcctgggagagacggagaa
aagggtgccactggagccatgggctatcgtggtatagtcggtggacctggcgtaccagga
gaagaaggagaaccgggacctcgaggaattgccatcaagggcgagccaggagaggacggt
tatccgggattgccaggtctgcagggtcagcaagggcttccagggccccaaggccctgta
ggagataaaggccaaccgggtctcacagtaatcggtgcccctggagaagaaggacgtccg
ggaagggatggacgaccaggcattcctggtgtacgcggagatcccggaccacctggtgac
cagggcacacccggtcgtggtgtggcgagacctggccccgatggacccataggtctacgt
ggaccaccgggtgaccaaggaattcctggtcggccgggtacgccaggtgcagatggccgt
ccgggacctaggggtgacgactgcggctactgcccaccaggcatacctggagatcgtggt
gcacctggagaagacggccgccctggccccgatggctcaatgggattccccggaactacg
ggcccgtctggggtgaaaggtgacagaggctatcctggtgctcgaggcatcccaggtctg
ccgggtcgagacggagaacctggctgggatggacagaagggcgagaaaggcttaccgggc
gaatacatctttccgccgggcccgctaccgccgggctccatcaaaggcgagaagggcgaa
cccggagaatacggacctaggggcctgtctggtcgtgagggcaaccctggactcatgggt
cagcctggaaccgcgggaggcaagggagaccagggtgacttcggagaccctggttaccgc
ggctccgacggccaggaaggttttcctggtctggctggtcgcaagggagaagcgggagac
aactacatcggcgagaagggagatgacggcgagccaggagagcccggagacatgggaccc
actggaccgcccggtgaaatgggtgatcccggactgccagtaaacattccggacaacttg
acacacttgatgggaccaaaaggtcaaccaggattgcctggtccgaacggcagagaagga
ccaaagggagacaaagggtcacccggctacgacggcttgcccggacggcagggagagaag
ggcgaccacggcacgccgggctactcccaacagggtcccgatggtctcaagggttacccg
ggtctcgccggtgaccaaggaccctccggtcgccgaggtacccctggaacggtcggagag
cgcggctacgatggacgtcccggcccgaagggcgcacgaggacgaccgggctcgggcaag
ggcacggggccacagggtctgccgggtattctgggacttaagggcgagcagggcgagtct
ggataccgtggagctcctggtcctgctggagagccaggattcaccggactgaagggacaa
agaggtgaacctggctacgtcggatacgctggaccaaaaggagtgaagggcgacgctggt
gatgctgggatcggaacacaaggaccccctggacctcctggctacgacggccagaaggga
gaaagaggactccccggcattccgggcactgatggtttccccggcgggcccggtttcaag
ggagaggcgggcgcaccgggcgcaccaggaccacgaggtcgcgacggccaacctggcacc
cggggagcaccagggacaccaggactcgaaggatacccgggagctaaaggtcgaaaaggt
gaggctggagattttggtcaacctggttgggacggaatcgccggagagccaggattcccc
ggtcttaaaggagccaaaggagagcggggcctaagcggactgcccgggtacccgggtctt
cctgggaggccgggttttccgggtgaacgtggagaactcggatatccaggtcttccaggt
ctgaagggagaccgggctcaacgaggaattcggggtgacgacggctacccaggactcgac
ggtgctcctggtccaaagggtccggtcggattcccgggtcttcctggacgaaaaggagag
cgcggcgagcccggccgagcactgggtgcgccagacgggctaccaggagaaccgggaccc
aggggctacgacggattcccgggcctgcctggattcaaaggcgaagctggaaaccctgga
ctccccggccctcctggtttagaaggagaaccagggttccctggcgtagttggcctcgac
ggtgcgaacggttttcctggtctccccggtctcccaggcgccgatggctttccgggcctc
cccggattcgacggcttaaagggtgactccggttttgctggacgaccgggttccactggt
ccaccgggtccaccaggtctgcctggacctccgggttttgatgggaaaccaggaatcaaa
ggagaaacgggagagcccggataccccggtctttcaacgttcgagatcagcaagggagac
aaaggagagccgggccagccgggaccacccggaatacgaggccttcctggcgaagacggc
ttcccaggccttccaggcgcgaagggccaggtcggtgagcccggattcgacggcgcgccg
ggcattgctggaagacccggccccaaaggataccctggcaaccccggagcccccggacct
gatggagcacccgctacagacgtttacccaggaccaaaaggagacgaaggcaatccaggg
ccacctggtttccccggtatcccgggactcaagggtgaagcaggagacccaggaccagac
ggaccagatggaccgcccggctacccagggatccctccgattggcttcaagggcgaacaa
ggagacgcaggagtgagcggccccccaggcacccccggcttaataggcagtccgggacag
cctggttaccccggcatcccaggattgaagggtctccgaggcgatgacggattgccggga
ccctttgttcccggaccaccaggactgccagggccgaggggacaagatggccagcgaggc
tacaggggggaaaagggggcgcctggagaatcgggattccccggttttcctggactcaaa
ggcgagatgggtgaacccggcttgcccggacctcctggaaggcccggtgtaaacggcaca
aaaggtgctaaaggacaacgtggcagcagcgacgccccggtcgattataggcctcaaggt
ttcccaggagagccaggctacccaggagccaacggtttgccaggtcttcccggcgaccaa
ggcttcccaggacccaacggtgaaccaggagactacgggcttccgggattcccgggactt
ccgggctactctgggccccgaggccttccgggtgacgagggattccaaggactaccaggc
ttccccggagagccaggcactccgggacgtccaggaaatcgtggtgctccgggtggtcct
gccaggtcccgagggtacttcttcaccaggcacagccaaacttcgcgaattccggaatgt
cccagaggaactcacccgctctggtctggctattctctcctctatattcttggggatgag
aaagcccatggccaagacttgggaagcgccggaagctgcttgcgcagattcagcacgatg
ccgttcctgttctgcagcttgaataatgtttgcaacttcgcgtcgaggaacgactacagc
tactggctcagcactccggaaccaatgcccatggcaatgacaccaattgtgggaagagac
atccagaaatacatcagtcgatgcagcgtctgcgagtcttccacgcaagtcatagccata
cacagtcagactctggaagtaccggagtgccctgaaggctgggacggcgtttggtctggc
tacagtttcttcatgaacactgattcgggagcagagggcagcggccagcccttggtctcg
ccaggttcctgtctcgaagagttccgacctaatccattcattgaatgtcatggtcatgga
aggtgtaactactacaccacagcattcagctactggttggcaacaatcgagcgtcacgat
atgtttagaccaccagacccacagacactcaaagcaggcgatctgagaacacgagtttct
cgctgcaaagtttgcaggcggcaggttattgtcccttga
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integrated database retrieval system
