Rhipicephalus microplus (southern cattle tick): 119162165
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Entry
119162165 CDS
T07403
Name
(RefSeq) collagen alpha-1(XI) chain-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
rmp
Rhipicephalus microplus (southern cattle tick)
Pathway
rmp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
rmp00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
119162165
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
rmp00536
]
119162165
Glycosaminoglycan binding proteins [BR:
rmp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119162165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
119162165
NCBI-ProteinID:
XP_037270532
LinkDB
All DBs
Position
2:complement(162556686..162716277)
Genome browser
AA seq
1836 aa
AA seq
DB search
MPQWGSNSHLLGAIQVFYHGVTPELREENKVDGDPRPPVSSPRRPGIDQEDASRATTMHE
IRGCWVDTRSNSSAADELLDDTDDASDEATQNWEDGLELCRALPGPKPEPSGSTGIAMSL
LSVRGPLSAAQARTQYNSVRKKWFKEYYLDIGTNFFTLPSLGWTKGIAQSVWNINTVDLV
GRVDLGLLPPGVEVRPGICDQRPAWLDSDGTPMFLGPDTAYSILAGANLSVSTVEAFPYG
FPRDFSVLATFRMQQNTQGYLLAVYDWDDEEQLTLHVGENLTFALRSDSSNASTVYSAVF
TEPFNDGKWHRMGLSVKGDAVTLVKDCVVRETEEMARSDDVLVDTSGVTLVGQALNITVD
PFQGDLQQLLIVHAPDAAYELCSRYVPGCAIPLPPLDADYGDPLLNRTDPGEREPRPDGT
YHNETTPYYPDGGTTPVPPFYPGIRYPVEGPPGPQGLPGPPGFPGLKGDKGDPGRDGLAG
TAGQPGAPGHVFMIPYPRAGDNKGPDHTEPLREMLSQHMMAMRGAPGPMGLTGLHGPVGP
TGPPGEKGERGEQGDVGPRGMRGQQGTSGKPGRRGRSGKDGERGKPGPPGPKGNVGLPGV
PGLPGEKGERGFIGAPGDQGLVGHEGPPGDDGATGLPGLPGEMGPRGFPGPRGFVGLPGP
PGIPGAEGPVGPKGNTGPPGGPGQPGQQGMQGPVGSPGPQGLLGPLGPQGPRGKPGLPGL
PGADGMPGPPGSAGPPGGKGDMGQAGQQGPTGFPGPRGVKGDDGPRGPPGDKGDKGAPGV
DGQKGDHGLNGERGPPGTEGGQGIEGPEGPKGFEGPRGEKGPPGPPGEKGKLGIPGFPGY
PGTTGPKGEKGFHGKPGEKGDKGDRGPPGQPGERGQIGPRGNRGQRGRVGKRGAPGEKGS
TGEPGPTGIQGERGPQGPEGARGFMGVPGSPGAAGKDGLPGPPGERGPPGETGTAGPPGP
PGVIGPAGPPGETGASGDIGPPGRPGVPGETGLPGPAGKEGPTGPVGLPGNKGPPGPPGP
PGFPGERGNMGPPGFPGPKGEIGLPGALGPPGDKGDIGLPGDPGPVGEKGRNGAIGPPGP
LGPKGDKGDMGGLGPLGRDGLPGARGLPGPAGPIGAPGEDGDKGDSGLPGLKGLKGTKGD
TGPPGVAGPQGLRGEPGVPGAEGEQGLRGPAGPQGSKGEDGPIGAPGSAGAPGLQGLPGA
RGGKGDKGDVGKRGPPGPTGMPGGPGPIGAKGGEGMPGTTGPEGPQGQKGDDGAPGLPGP
PGKDGEQGSRGPPGPKGEEGKPGLQGVPGLKGPPGPEGSKGSPGAPGFPGPPGAAGLPGI
KGERGSDGVDGQPGVAGEMGPKGEMGKMGTPGAPGKPGPMGPAGSQGDIGLPGDKGDKGE
MGPLGLQGIAGPPGPPGPSGPQGLRGSPGVAGDVGAPGLVGPPGRPGSTGAPGEKGMKGD
RGKRGFKGHSGLLGRTGAKGDVGEKGEKGQRGDTGPPGPPGPQGPIGMEGPKGSDGPQGE
PGLEGIPGPKGVQGPAGNKGETGPQGPIGPPGPPGEGPQIPPEMLFQRDHSYRFKRSVEK
LNINDEDTVTATTSKSDYDDDDDVDEHNSTMTAEPLTKASFQKINRTLTHIFANVYIMRR
EIEHIRRPVGSQLNPARSCRDLRLAHPDTSDGWYWVDPNLGASDDAVRAYCDMRAGGETC
VFADEDTHSARIFRWKKPSPSAVANSSSTWFSHLKGGFKVRYHAVGDVQLRFLGLLSTTA
YQNFTFVCKNVNAWYSQRTKDHANALRFRGGDATLISFEKNSPTVPVDDCQYRDGKTVFV
FKTKEPATLPIVDFQPFDFGGEHQSFGFEIGPVCFQ
NT seq
5511 nt
NT seq
+upstream
nt +downstream
nt
atgccccagtggggatcaaactcacacctgctgggtgccatccaagtattctaccacgga
gttacaccggagctgcgagaggagaacaaggttgacggagaccccagacctcctgtcagc
agcccacggcgccccggaatagaccaggaggacgcgtcgcgcgcaacaaccatgcacgag
atccgcggttgttgggtggacacccgttcgaattcatctgcagctgatgaactacttgac
gacacggatgatgcaagcgacgaagctacacagaactgggaagatggccttgaactatgc
cgcgcattgccagggccgaagcctgaaccctccggcagcactggcatcgccatgagcttg
ctgtccgtgcggggtccgcttagcgcagctcaagcacgcacgcagtataactcggtgcgc
aaaaagtggttcaaggaatactacttggacatcggcaccaacttcttcactttgccttca
ttgggttggacgaagggaattgctcagagtgtctggaacatcaatactgtcgacctggtt
ggccgtgttgacctgggtctgctccctccgggtgtcgaggtgcggccgggtatctgcgat
caacgaccagcctggttggactccgatggcacgcctatgtttctgggtccagacacagca
tacagcattttggccggagccaacctctcggtgtccacggtggaagcatttccatacggc
ttcccgcgagacttctcggtgctggccacgtttcgcatgcaacagaatacgcaaggctac
ctgctcgccgtctacgactgggatgacgaggagcagttgacactgcacgtgggcgagaac
ttgactttcgcgctgcggtccgacagtagcaacgcaagcaccgtctactcggcagtattc
actgagcctttcaacgacggaaagtggcatcgtatggggctgagcgtgaaaggcgacgca
gtcaccctggtcaaggactgcgtggtgcgcgagactgaggagatggcccgctccgacgac
gtacttgtcgacacttcgggagtcactctagtcggacaggcattgaacatcactgtcgat
cccttccagggagacctacagcaactgcttatagtccacgctccagacgcggcttacgag
ttgtgcagtaggtatgttcctgggtgcgccatcccactgccgccactagatgccgactac
ggggacccactcctcaaccggaccgatcctggtgagagggaaccacggccggatggaacc
taccacaatgaaacgactccgtattatccggacggaggaacaacaccagtgccacccttc
tatccggggatccgctatcccgttgagggtcctccgggtcctcagggcctacccggtcct
cctggatttcccggacttaaaggagacaagggagacccggggagggacggacttgccggc
acggctgggcaacctggcgcccctggacatgtttttatgataccatatccgagagccggg
gacaacaaaggtcctgaccacaccgaacctctgcgagagatgctcagccagcacatgatg
gcaatgaggggtgcccctggacctatggggttgactggcctacatggacctgtgggtcca
acggggccacctggtgagaaaggggagcgtggagaacaaggtgacgtgggaccgagagga
atgcggggccaacaaggaacatctggaaagccgggaagacggggacggagtggcaaggac
ggcgaacgcggaaagccagggcctccgggtccaaagggcaatgtaggccttccgggtgtt
ccaggtctgccgggagagaaaggtgaaaggggtttcataggtgcgcccggtgaccagggc
ctggtaggacacgaagggcctccgggtgacgatggcgctacagggcttcccggacttcct
ggagagatgggtccacgaggattccctgggccgcgcggattcgttggactcccaggacca
cctgggataccgggagcagaagggcctgtgggaccaaagggtaacacgggtcctccaggt
ggacctgggcagccagggcagcaagggatgcagggcccggtggggtcaccaggccctcag
ggcctcctaggaccattgggaccacaggggcctagaggaaaaccagggcttccaggtctc
ccaggagcggatggaatgccaggaccaccaggaagtgctggtccacccggtggtaaaggt
gatatgggacaagctggacaacagggaccaacaggattcccaggtccccgcggcgtgaag
ggtgacgacggtccacgagggcctccaggtgacaaaggggataagggtgcacccggagtg
gacggccaaaaaggtgaccatggacttaatggtgagcgaggtcctccgggtaccgagggt
ggacaaggaatagaaggccctgaaggccccaagggatttgagggacctcgaggagagaaa
gggccgccaggaccaccaggtgaaaagggcaaactgggtattccgggattcccaggatat
ccaggaacgactggaccgaagggcgagaaaggatttcatgggaagcccggagagaagggg
gacaaaggtgaccggggaccaccaggtcaacctggagagcgaggacaaattggaccacgg
ggaaacagaggccagagaggaagagtcggaaaaagaggggcacccggagaaaagggcagc
accggggagcctggacctactggtattcagggcgagaggggaccccaaggccctgaaggc
gcgagaggctttatgggagtgccaggatcacctggggcggcgggaaaggacgggcttccg
ggacctccaggtgaacgagggccacccggtgaaaccggcacagcaggacctccagggcca
cctggcgtcatcggaccggcgggcccacccggggaaacaggagcctccggtgacatcgga
ccacctggtcgtccgggtgttccgggtgagacaggcctgcctggaccagctggaaaagag
ggtccgacgggtcctgttggccttccgggcaacaaaggccctcctgggcctccaggtcct
ccaggctttccaggagaaagggggaacatggggccaccggggttccccggtcctaaaggt
gaaattgggcttccaggagcgctcgggccacccggtgataaaggtgacattggcctacct
ggtgaccccgggcctgtgggtgagaagggacggaatggtgccatcggtccaccggggcca
ttgggtccaaagggagacaagggtgacatgggaggtcttggtcctcttggtagagacgga
cttccgggagcaagggggcttccgggaccagcgggacccattggagcaccaggagaggat
ggagacaagggtgactcaggcctgcctggtctgaaagggctgaaaggtaccaagggtgat
acggggcctcctggtgtggctgggccacaaggactgaggggagagcccggcgtaccaggc
gcggaaggcgagcaaggtttgcgaggtcccgctggacctcaaggaagcaagggagaggat
ggtcctataggagcccctggtagtgccggtgcccctggactgcagggtcttcctggtgct
cggggtgggaaaggtgacaaaggagacgtaggcaagaggggtcctcctggaccaactgga
atgccaggtggaccaggtcctataggagcgaagggcggcgaaggtatgcctggtaccacg
gggcctgaaggtcctcaggggcaaaagggagacgacggagcgcctggccttccgggacca
ccgggcaaagacggcgaacagggatcgagaggtcctccgggccctaaaggtgaagaaggg
aagcctggtcttcagggcgtacctggtctcaaagggccacctggccccgaagggtcgaaa
ggttcacccggcgcgccaggctttcctgggcctccgggggccgctgggttgcctggaata
aagggcgaaagaggcagtgacggagtcgatggtcaaccaggggtggctggtgagatgggt
ccaaaaggcgaaatgggaaagatgggaactcctggagcacctggaaagccgggtccaatg
ggtcctgctggctcgcaaggggacattggccttcctggagacaaaggtgacaagggcgag
atggggccactgggactccaagggatcgcaggaccaccgggtccaccaggaccatctgga
ccacaaggtcttcgagggtctccgggtgttgcaggtgacgttggagcccctggcttagtg
gggccgcctggcagacctggaagtacgggtgcgccaggtgaaaagggcatgaagggtgat
cgaggaaaacgtggcttcaagggtcacagtggtctgctaggaaggaccggtgccaaaggc
gacgtcggtgaaaagggagaaaaaggtcagcgtggagacaccggaccccccggacctccg
ggaccccagggacccataggaatggaaggcccgaaaggttccgatggaccgcaaggagag
ccgggtctcgaaggcattccgggtcctaaaggcgttcagggaccagcgggaaataagggg
gaaacaggaccacaaggacctattgggcctccgggcccgccaggagaaggaccccagata
cctccggagatgctgttccagagggaccattcctacaggtttaaacgcagtgtcgaaaaa
cttaacattaacgatgaagacaccgtcacggccaccaccagtaaaagtgattatgatgac
gacgacgacgtcgatgaacacaactccacgatgacagcagaacctctgaccaaagcatca
ttccagaagatcaaccgcacgctgacacacatttttgccaatgtgtacatcatgcgtcgc
gagattgaacacatccggcggcctgttggttcacagcttaatccggccaggtcgtgccgt
gacctgagactagcgcacccggacacctccgacggctggtattgggtggaccctaatctg
ggagcatcggatgacgcggtgcgggcctactgtgacatgcgtgccggcggcgagacctgc
gtgttcgccgacgaagacacgcactctgcccgaattttcaggtggaagaagccttcccct
tccgcagttgctaacagctcgtcgacatggttcagccacctcaagggtggtttcaaggtc
cgctatcacgccgttggtgatgttcagctgcgctttctggggcttctgagcaccacagcc
taccagaactttactttcgtttgtaaaaacgtgaatgcttggtacagccaacgaaccaaa
gaccatgctaacgcacttcgcttccggggtggagacgctactctcatcagcttcgagaag
aatagcccaacggtacctgtggatgactgccagtaccgggacggcaagacggtatttgtg
ttcaagacgaaggaaccagccacactgcccattgtagacttccagccattcgacttcggc
ggtgaacaccagtcttttggattcgagattggacctgtttgttttcaataa
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