Rhipicephalus microplus (southern cattle tick): 119163378
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Entry
119163378 CDS
T07403
Name
(RefSeq) RNA-splicing ligase RtcB homolog isoform X1
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
rmp
Rhipicephalus microplus (southern cattle tick)
Brite
KEGG Orthology (KO) [BR:
rmp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rmp03016
]
119163378
Enzymes [BR:
rmp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
119163378
Transfer RNA biogenesis [BR:
rmp03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
119163378
Prokaryotic type
tRNA splicing ligases
119163378
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF6471
Motif
Other DBs
NCBI-GeneID:
119163378
NCBI-ProteinID:
XP_037271257
UniProt:
A0A6M2CUG3
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Position
3:95911125..95949604
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AA seq
506 aa
AA seq
DB search
MGVRSYNEELGYLEKMSPVSWRIKKGFVPNMKVEGMFYVNNLLEKLMFEELRNSCRPGNV
GGFLPGVKQIGNVAALPGIVGHSIGLPDIHSGYGFAIGNMAAFDMDDPKAIVSPGGVGFD
INCGVRLLRTNLMEKDVQPIKEQLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWS
LREGYAWAEDKEHCEEYGRMLNADPAKVSMKAKKRGLPQLGTLGAGNHYAEIQVVDDIYD
KNNAAKMGIERCGQVCVMIHSGSRGFGHQVATDALVAMEKAMKRDKIDVNDRQLACALIR
SNEGQDYLKSMAAAANFAWVNRSSMTFLSRQAFAKAYNTTPDDLDMHVIYDVSHNIAKVE
QHVVDGKMRTLLVHRKGSTRAFPPHHPLIPVDYQLSGQPVLIGGTMGTCSYVLTGTEQGM
GETFGTTCHGAGRALSRAKSRRNLDYQDVLNKLNEMGISIRVASPKLVMEEAPESYKNVT
DVVNTCHEAGISRKCIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgggcgtccgcagctacaatgaggagctcggataccttgaaaaaatgtcaccagtctca
tggcgcatcaaaaagggcttcgtgccaaatatgaaggtggaaggaatgttctacgtgaat
aacctcttggagaagctgatgttcgaagagctgcgaaattcgtgtcgtccaggaaacgtt
ggcggattcctgcctggtgttaaacaaattggaaatgttgctgccttgcctggaatcgtt
ggacactcaatagggcttcctgacatccattctggttatggttttgcaattggcaatatg
gcggcatttgacatggatgatccaaaggccattgtgtcacctggtggtgtgggctttgac
atcaattgcggtgttcgtctcttacgaaccaacttgatggagaaggacgtccagcccatc
aaagagcagttggcacagagcatgttcgaccacattcccgttggcgtcggatctaaggga
atcattcccatgaatgcaagagaccttgaagaagccttggagatgggcatggattggtcc
ttaagagaaggctatgcctgggccgaagataaggagcattgcgaggagtatggacgaatg
ctgaatgctgatcctgccaaggtttccatgaaggcaaaaaaacggggcctacctcagctg
ggcaccttgggcgctggcaatcactatgccgagattcaagtggtggacgacatttatgac
aagaacaatgcagccaagatgggaatcgagcgttgcggtcaagtatgtgtcatgattcac
agtgggagtcgtggctttggacaccaagtggctacagatgcattggtggccatggagaag
gccatgaagcgggacaagattgatgttaatgaccggcagctggcctgcgcccttatccgc
tccaatgaggggcaggactacctgaaatcgatggcagcggcagcgaactttgcttgggtc
aatcgcagcagcatgaccttcctaagccgtcaggcttttgccaaagcatacaacacgacc
ccggatgacctcgacatgcacgtcatctacgatgtgtcgcacaacatcgccaaggtggag
cagcatgtggtggatggcaagatgcgcacattgctcgtgcatcgcaaaggctcaacacga
gcctttccacctcatcatcctctcattcctgttgactaccagctgagtggtcaaccggtg
cttattggcggcacaatgggaacctgtagctatgttctgacgggcaccgagcagggcatg
ggcgagacattcggcaccacctgtcatggtgctggccgagcactttcccgggccaagtcg
cgtcgaaacctcgattaccaggacgtactgaacaagctgaacgagatgggcatctcgatt
cgcgtggcctcaccgaagctggtcatggaggaagctccagaatcgtacaaaaatgtgacg
gacgttgtaaacacgtgccacgaggctggcatcagccgcaagtgcattaagctcaggccc
attgcggttatcaagggctga
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