Rhipicephalus microplus (southern cattle tick): 119163706
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Entry
119163706 CDS
T07403
Name
(RefSeq) HBS1-like protein
KO
K14416
elongation factor 1 alpha-like protein
Organism
rmp
Rhipicephalus microplus (southern cattle tick)
Pathway
rmp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rmp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119163706
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmp03019
]
119163706
Messenger RNA biogenesis [BR:
rmp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
119163706
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
119163706
NCBI-ProteinID:
XP_037271666
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All DBs
Position
3:complement(126830776..126874415)
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AA seq
1161 aa
AA seq
DB search
MSRHRNVRTMNYDDDYEGYYDVYGRSQEEDSCISPTTEEQFLYNRDKLHSMSSFLSPEVL
QEENEEEDEEDESHKPATREPQLSPVDEVRLYECIEKMQNVVGDSIPEATLRRVALEGDF
NAEVALDRLLREMDKPKPQREPRKRESDSEDDDSCVVSPSDTVFDGGGGTSIAVPHLTTV
VAQFDVPARSRGDNARRSSSSERAGRAAVTANAGTDSATLLNLALFSSPPTACTVETLGC
DLELDDLLKSDCSAESRKADSLPKAMHSISGCDGAPQPLLVHDQCETVPETSLAHASSTT
CDLSTNLQVSRMDSRDGFLEALLQEGNVPSDISPSGPTGKPSSAVPDELDLLLGMVSSHK
PHPVGPIDTSRHNNQATSASASRNVQSVGKPVKDDVGDSLDELLGIGADSSAPRQGGKGA
IETDFDDFLMSLRTDFGGASDLTRREDGLGMLPIADVLSAASSDEKGPMKSPQKPSSKKQ
QPALLNLGEILGLNREPTPNTAAEGGALKLDDILKGTTAVGVAAVTRQESHSYGYGSESP
EFSPLHSTAAVKEASLFGKVLVYFCFVRRQMPTFELMSWLRKLGVLELRPGDKTRMAAFN
FGVPSPDDIVRACRKRAVAASERKPTPLGQVGAPARAAGANKELLPAVDSALRQSFPKQP
QPDVEDKRCKASSETLKVPSATNSNRSSPDLDRKEPSPEAGGDSQPADSATPKTPRSKPP
KDVAAEYAKERGSTKSLLNLVVIGHVDAGKSTLMGHLLYRLGCVQKKQMHKYEQESKKLG
KASFMYAWVLDETSEERNRGITMDVAQAKFETPNRSIVLLDAPGHRDFIPNMITGAAQAD
VAILVVDATRGEFETGFETGGQTREHTLLVRSLGVSQLAVAINKLDNVSWDEGRYNEITA
KLRSFLRQAGYRESDFTFVPCSGLTGENLTTKPESGSPLTKWYMGPCLVDVIDSFKPPER
PVSKPFRLCVSDVFKGQGSGFCVSGRIDAGCVANGDKVLVMPAAEQGTVKGITIDELSTT
QAFAGDQVALTLAGVDMIKVRLGSFLCDPAVPIRVSTRFQARLVVFNIEVPLTRGFPVVL
HYQSTTEQASIHRIISQLNKVTGEVVRNKPRCLVKNTSGLVEIKVSRPICVELYKEFKEL
GRITLRSGGSTVAAGVITEVM
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgtctcggcaccggaatgttcggactatgaattacgatgacgactacgaaggctactat
gatgtctacgggagatcacaggaagaagattcgtgcatatctccgactacagaggagcag
ttcctgtacaacagggacaagctccactccatgtcatcattcctgtctcctgaagtcctg
caagaggagaacgaggaggaggacgaggaagacgaatcccacaagcctgcaacccgggaa
ccccagctcagtcccgtggacgaagtgaggctttacgagtgcatcgagaagatgcagaac
gtggtgggtgactcgatacctgaggccacgcttcgtcgggtggccctcgagggagacttc
aacgccgaggtcgctctcgaccgtctcctacgagaaatggacaagccgaagccgcagcgc
gagccacggaagagagaatcggacagcgaagacgatgattcatgtgtcgtttcgccgtcc
gacacggtgttcgatggtggtggtgggacgtccatagcggtcccacatttgacgactgtc
gttgcacagttcgatgtgcctgctagaagtcggggcgataatgcgcggagatcaagcagc
agcgagcgcgcagggagagctgccgtgacagcgaatgcggggacagactcggcaacactt
ttaaatcttgcgcttttttcctctccccccactgcatgtacagttgaaaccttaggttgt
gacttagaacttgacgatttgctcaaatcagattgctcggctgaatcgcgtaaggcagac
agcctgccgaaagccatgcacagtattagcggttgtgacggtgcaccgcaacccttgctt
gttcatgaccagtgtgagacagtacctgaaacatcgctcgcccacgcttcaagcactact
tgtgatctcagtactaaccttcaagttagtcgtatggactctagggacggctttcttgag
gcacttctccaagaaggaaatgttccaagcgacatctcaccatcgggccctacaggaaaa
ccatcgagtgcagtgcccgatgagctggacttactgttgggcatggtgtcgagccacaag
ccacatcctgtcggcccgatcgacacttcaagacacaacaaccaagctacttcagcgagt
gcgagtcgcaatgtgcaatctgtaggcaaacctgtaaaagatgacgttggagacagctta
gatgaacttttgggaatcggtgcggactcctcagctccgcgacaaggcggcaaaggcgct
attgaaacggacttcgacgactttctcatgtcgttgaggactgactttggtggtgcaagt
gacttgactaggcgggaggatggtctggggatgctgcccatcgcagatgttttgtcggca
gcttccagcgatgagaagggacctatgaaatcgcctcagaagccaagctcgaagaaacag
cagcccgctttgctcaatctcggtgaaatactcggcctgaacagagagcccactcccaat
acggctgctgagggtggagctctcaaactcgacgatattctgaaaggaaccacggcggtg
ggtgttgctgcggtcaccagacaagagagccactcatacggttatggcagtgaaagcccc
gagtttagtccccttcacagcaccgcagctgtgaaagaagcgtccctctttggcaaagta
ctcgtgtacttctgttttgtccggcggcagatgcctacctttgagttaatgagttggctg
agaaagcttggtgtgctggagctgaggcctggagataaaacgaggatggcagcattcaat
tttggcgtgccgtcgcccgatgacatcgtgcgtgcgtgtcggaaacgtgcggttgcagcg
tcagagcgaaaaccaacgcctctcggacaagttggcgcgcccgccagagctgccggtgcc
aacaaggagctgcttcccgcggtcgactcggcgctgaggcagtcgtttcccaagcaacct
cagcctgatgtcgaagataagcgctgcaaagcatcgtcggagactctcaaggtaccaagt
gcgacaaattccaaccgcagttctccagatctggatcgcaaggagccctctccagaagct
ggtggggactcgcagccagctgacagcgccacccccaaaacaccaaggtccaagccaccc
aaggacgtggctgcagaatatgccaaggagaggggctccacgaagtctcttctcaacttg
gtggtcattgggcatgttgacgccggcaagagcacactcatgggacacctcttgtacagg
ctgggctgtgtgcagaagaagcaaatgcacaagtacgagcaggagtccaagaaactgggg
aaggcttcattcatgtatgcctgggtgttggatgagacgtctgaagagaggaatcgcgga
atcaccatggatgtggctcaggcgaagtttgagacgcctaaccgtagtatcgtcctctta
gatgcaccgggtcatcgagacttcatcccaaacatgatcacgggcgccgcccaagcggac
gttgccatcctagtagttgacgccacccggggcgaattcgaaactggtttcgaaacggga
gggcagacgagggaacacaccttgcttgtgcggtcactaggtgtctcccagcttgcagtg
gccatcaacaagctggacaatgtgtcgtgggacgaggggcgctacaacgaaatcacggcc
aagctgcgcagtttcttgcgacaggccggctaccgggagtctgacttcaccttcgtgcct
tgcagtggcctgacgggcgaaaatctgaccaccaaaccggagtccggttctccactcacc
aagtggtacatggggccttgccttgttgacgttattgatagcttcaagccacccgaacgg
cccgtgtcgaagcctttccggttatgcgtaagcgatgttttcaagggccaggggtctggt
ttctgcgtttccggtcggatagacgccggctgtgtggctaacggcgacaaagtcctagtg
atgccggcagccgagcagggaaccgttaaaggaatcaccattgacgagttatcaacgacg
caagcgtttgcgggtgatcaagtggcactgacactggccggtgtggacatgatcaaggtg
agattgggaagcttcctctgtgatccggccgtgccaattcgggtgtcgacgcggttccaa
gcacgtctggtggtgtttaacatcgaggttcccctgactaggggattccccgttgtgctc
cactaccagagcacgacggagcaggcttccatccatcgcataatatcgcagctgaacaag
gtcacgggtgaagtggtgcgcaacaagccgaggtgtttggtgaagaacacgagtggcctg
gttgaaatcaaggtgagccgtccaatatgcgtggaactctacaaggaattcaaggagctc
ggccgcatcactcttcggtcgggtggcagcaccgtggccgctggcgttatcaccgaggtg
atgtaa
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