Rhipicephalus microplus (southern cattle tick): 119163872
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Entry
119163872 CDS
T07403
Name
(RefSeq) LOW QUALITY PROTEIN: cleavage stimulation factor subunit 3-like
KO
K14408
cleavage stimulation factor subunit 3
Organism
rmp
Rhipicephalus microplus (southern cattle tick)
Pathway
rmp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rmp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119163872
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmp03019
]
119163872
Messenger RNA biogenesis [BR:
rmp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
119163872
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_14
NifW
Motif
Other DBs
NCBI-GeneID:
119163872
NCBI-ProteinID:
XP_037271844
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Position
3:complement(145754413..145847228)
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AA seq
742 aa
AA seq
DB search
MLTAGSKRESVAQMEGYIPDRVKNAEKRLEQNVYDVEAWSILLRDSQNKKIEEARPLYEK
IVTQFPNAGRYWKIYIEHEMKSRNFERVEKLFQRCLMKVLNIDLWRCYLTYVKETKGSLP
TYREKMAQAYDFALDKMGMDILSYPIWNDYINFLKSVEAVGSYAENQRITAVRKVYQRGI
VNPMMNIEQLWKEYINYEQGINMLIAEKMISDRSREYMNARRVGKEYEAVTRGLNKNSPS
VPPQGTPEEAKQVELWKKYIAWEKSNPLRTDDHALITKRVMFAYEQCLLCLGHHPDVWYE
AALFLEQSSKLLTDKGDLNAGKLFSDEAAAIYERATTTLLRKNTLLYFAYADFEESRMKH
EKVHQVYNKFIEIPDIDPTLAYIQYMKFARRAEGIKTARVVFKKAREDARSGHQVYVAAA
LMEYYCSKEKTVAFKIFELGLKKYGDNSDYIMAYIDYLSHLNEDNNTRVLFERVLTSGSL
PPEKSVEIWNRFLEFESNIGDLSSILKVEKRRAAAIEKLKEFEGKETALLVDRYRFMDLY
PCSPQELKSLGYRDVTRLPVVVSSAPASKREVREENVADQQSPVYPRPDTGQMIPFKPKQ
ICPTGAHIVPGGVFPPPPAASELMMRLPPPQCFMGPFAAVDELMEVFRTMNLPEKPPRPV
ENGVSKEHLKLFEHSQTGGPQSGNPGGGGGVKRKHRDGAATGGGGGTNAGGGGAEESEEE
DGGLAPPVHDIYRSRQQKKLMF
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atgttaaccgctggttccaagcgcgagagcgtggctcaaatggagggatacattccggac
agggtgaaaaacgccgagaaacgtctcgaacaaaatgtctacgacgtggaagcctggagc
attctgcttagggactcgcagaacaagaagatcgaggaggctcggccgctctacgagaag
atagtgacgcagttccccaatgctggccgctactggaagatttacattgaacacgagatg
aagtcgagaaattttgagagagttgaaaagctgttccagcgttgcctcatgaaggtcctc
aacatcgacttgtggaggtgctacctgacttacgtcaaggagaccaagggatctttgcca
acctacagggagaagatggcgcaggcatacgactttgcgctcgacaagatgggcatggac
attctctcgtaccccatctggaatgactacatcaatttcctcaagagcgtggaggcggtg
gggtcgtacgcagagaatcagcgcataacagccgtacgcaaggtctaccagcgaggcatc
gtcaatcccatgatgaacatcgagcaactgtggaaagagtacatcaactacgaacagggc
atcaacatgctgattgcggagaagatgatctcggaccgcagtcgagagtacatgaacgcg
cgtcgcgtcggcaaggagtacgaggcagtgacccggggcttgaacaagaactcaccatct
gtgccgccacaggggacacctgaagaagcaaagcaggtggagctgtggaagaaatacatt
gcttgggagaagagcaatcccctcaggacggatgaccacgccctcatcacgaagcgggtg
atgtttgcgtacgaacagtgcctgctgtgcctgggccaccacccggacgtgtggtacgag
gcggccctcttcctcgagcagtccagcaagctgctcaccgacaagggagacctgaacgcc
ggcaagctcttctcggacgaggcggccgccatctacgagcgcgccaccaccacactgctg
cgcaagaacaccctcctctacttcgcctacgccgacttcgaagagagccgaatgaagcat
gaaaaggttcatcaagtctacaacaagttcatcgaaattccagacatcgacccaacgctg
gcgtacatccagtacatgaagtttgcgaggcgggccgagggcatcaagacggcacgggtc
gtcttcaagaaggcgcgagaggacgctcggagtggccaccaggtgtacgtggctgcggca
ctcatggagtactactgcagcaaggaaaaaaccgtggccttcaagatcttcgagctgggc
ctgaagaagtacggtgacaattcggactacatcatggcctacatagactacctctcacat
ctgaacgaggacaacaataccagggtgctgttcgaaagagtgctcacatcgggatcgctg
ccaccggaaaagtctgtagaaatttggaatcggtttctggaatttgagtccaacatcggc
gacctctcgagtattctcaaggttgagaagcggagagctgccgctatcgaaaagctcaag
gagtttgaaggcaaggagacagcactgctggtggaccggtaccggtttatggacctgtat
ccttgcagtccacaagaactgaagtccctgggatacagagacgtgacacggctgccagtg
gtggtgtcgtctgcgccagcgtcaaagcgtgaggtgcgcgaggagaatgtggcggaccag
cagagccccgtgtacccccgccctgacacgggacaaatgatacccttcaagcccaagcag
atctgcccgactggtgcgcacattgttcctggcggcgtgttcccgcctccgccggcggca
tctgaactgatgatgagactgccgccacctcaatgtttcatgggtccctttgcggcagtt
gatgagttgatggaggtctttcggaccatgaaccttcctgagaaacccccccgcccggtc
gagaatggcgtctcaaaggaacacctcaagctcttcgagcacagtcaaacgggtggcccg
cagtccggcaaccctggtggcggaggaggcgtcaagcgcaagcaccgcgacggtgccgcc
actggtggtggcggcggcaccaacgcgggcggcggaggtgccgaggagagcgaagaggag
gatgggggtctagcgccacctgtgcacgacatctatcgatcgcggcaacagaaaaagctc
atgttttag
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