Rhipicephalus microplus (southern cattle tick): 119164273
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Entry
119164273 CDS
T07403
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB2-like
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
rmp
Rhipicephalus microplus (southern cattle tick)
Pathway
rmp03020
RNA polymerase
rmp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rmp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
119164273
09124 Replication and repair
03420 Nucleotide excision repair
119164273
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rmp03021
]
119164273
03400 DNA repair and recombination proteins [BR:
rmp03400
]
119164273
Enzymes [BR:
rmp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
119164273
Transcription machinery [BR:
rmp03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
119164273
DNA repair and recombination proteins [BR:
rmp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
119164273
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
119164273
NCBI-ProteinID:
XP_037272317
LinkDB
All DBs
Position
3:complement(180426700..180470862)
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AA seq
1174 aa
AA seq
DB search
MYEAEEDGFGEDESEEITPDLWQEACWIVISAYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DTPQIDLQAEAQHTSGEIENPPRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTY
SAPLYVDITKTVLKENEEAVETQHQKTFIGKIPIMLRSTYCLLNNLTDRDLSELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFQMKDSKYAYKAECRSCLEHSSRPTSTLWVNML
ARGGQGVRKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFEDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGARPGVTKEKRIKYSKEILQKEMLPHVGVSDFCETK
KAYYLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLMAFLFRGLFRNLTKEVRMYAQ
KFIDRGKDFNLELAIKTRIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTYASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGHAVGLVKNLALMSYISVGSQPSP
ILEFLEEWSMENLEEIAPSAIAEATKIFVNGCWVGIHRDPDQLMNTLRKLRRQMDIIVSE
VSMVRDIRDREIRXYTDAGRICRPLLIVEDQKLLLKRRHIDNLKDREYNNYSWQDLVASG
VVEYIDTLEEETVMLSMTPDDLQDKGLAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGIYITNFHVRMDTLAHVLYYPHKPLTTTRSMEYLRFRELPAGINSIV
AIMSYTGYNQEDSIIVNASAVDRGFFRSVFYRSYKDSECKRVGDQEEQFEKPTRETCQGM
RNAIYDKLDDDGIIAPGTRVSGDDVIIGKTITLPENDDDLESTNRRFTKRDASTFLRNSE
TGIVDQVMLTVNAEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGITYRQEDMPFTAEG
LTPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDSVNVQKISNLLQEYGY
HLRGNEVMFNGHTGRKVNAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRAR
DGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRAHICNLCGLLAIANLRNNTFECKGC
RNKTQISQVRLPYACKLLFQELMSMSIAPRMMVL
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtatgaagccgaagaagatggctttggtgaggatgagtcggaggagatcacacctgac
ctctggcaggaggcctgctggattgtcatcagtgcctactttgatgagaaaggcctggtg
cgacagcagctggattcattcgacgaattcatccagatgtccgtccagcgcattgtggag
gacacaccacagattgacctgcaagctgaagcgcagcacacttcgggtgaaatagagaat
ccgcctcgctatttattgaagtttgaacagatctacctctccaagccaacccactgggaa
aaggatggagcacccagccccatgatgccaaacgaggctaggctgcgtaacctgacgtac
tcggccccactttacgtggatatcaccaaaacagtcttgaaagaaaatgaggaagctgtg
gagacgcagcaccagaagactttcattggcaagattcccataatgcttcgctccacgtac
tgccttctgaacaaccttactgaccgtgacttgagtgaactgaacgagtgccctcttgat
cctgggggctacttcatcatcaacggctctgagaaggtactgattgcccaggagaagatg
gcaaccaacacagtgtacgtattccaaatgaaagattccaagtacgcctataaggctgaa
tgccgctcctgcctagagcactcgtcccgacccaccagcacactctgggtcaacatgctt
gccagaggaggccagggagttcgcaagagtgctatcggccagaggattatagctatattg
ccctatatcaagcaagaaattcctataatgatagtgttccgagcactgggctttgtggct
gatcgtgacatcctggagcacattatctacgattttgaagatcccgagatgatggagatg
gtgaagccttccttggacgaggcctttgtgatccaagagcaaaatgtggcactgaacttc
atcggttctcgtggagcacgccccggtgtcaccaaggagaagcgcatcaagtattccaag
gaaatcctccagaaagaaatgcttcctcacgtcggtgtgagcgacttctgtgaaaccaaa
aaggcgtactacctcgggtacatggttcaccggctgctgcttgctgctcttggacggaga
gagctggatgaccgggatcactacggcaacaagcgcctagatttggctggtcccctgatg
gcttttctgtttcggggtcttttccgcaacctcaccaaagaggtacgcatgtatgcccag
aagttcatcgaccgaggcaaggacttcaacctcgagttggccatcaagacccgcatcatc
accgacgggctgcggtactctttggccacgggaaactggggcgaccagaaaaaggcacat
caggcacgtgcgggggtgtctcaggtgctcaatcgtttgacctatgcttcgactctgtca
catcttcggcgcgtcaactctcccatcggtcgagatgggaaacttgccaagccccgccag
ctccataacacactgtggggtatgatctgcccagccgagacaccagaaggccacgctgtg
ggtctggtgaagaacctcgcccttatgtcctacatttctgtgggctcgcagccctcgccc
atccttgagttcttggaagaatggagcatggagaacttggaggagattgcaccttcagcc
attgcagaggctacaaaaatatttgtcaacgggtgctgggtaggcattcacagggacccg
gaccagttgatgaacacacttcgcaagctgcgccgacagatggacatcatcgtgtcagaa
gtgtcgatggtgcgggacatcagagatcgagaaattcgantctacaccgacgcgggccgc
atctgccggcccctccttattgttgaagaccagaaacttctgctcaagcgccgccacatt
gacaacctgaaggatcgggaatacaataactacagttggcaagacttggtggccagtgga
gtggtcgagtacatcgacacactcgaggaagagactgttatgctgtcgatgacccccgac
gacctgcaagacaaaggactcgcatattgttcaacctacacgcactgtgagatccaccca
tccatgattcttggtgtgtgcgcgtccatcatcccctttcctgaccacaaccagtcaccc
cgtaacacataccagtctgctatgggaaagcaagccatgggcatctacatcacaaacttc
cacgtgcgcatggacacccttgcccatgtgctctactatccccacaagccgctgaccaca
acacgttcaatggagtacctccgttttcgtgaattgccagctggcatcaactccatcgta
gccattatgtcatacacaggatacaaccaggaggactccatcattgtcaacgcctcggcc
gtcgaccggggatttttcaggtcggtgttctatcggtcttacaaggattctgaatgcaag
agggtcggtgaccaggaggaacagtttgagaagccaacaagggagacctgccagggcatg
cgaaatgccatctatgacaagctggatgatgatggcatcatagcaccaggtaccagagtg
tctggagacgatgtcattattggcaagacgatcaccctgccagaaaatgatgatgatctg
gagagcaccaacaggcgattcaccaagcgtgacgccagcacattcttgcggaacagtgaa
acaggcattgtggaccaggtgatgctgactgtgaatgcagaaggctacaagttctgcaaa
attcgagtgcgctcggtgcgcatcccacagatcggtgacaagtttgccagtcggcatggc
cagaaaggcacttgtggtatcacctatcggcaggaggacatgcccttcacagcagaagga
ctaacaccagacatcatcattaatccccacgccatcccttctcgtatgaccattggccat
cttatcgagtgcctgcaaggcaaggtctcggccaacaagggtgaaattggtgacgctaca
ccctttaacgactctgtcaacgtacagaagatctccaacctccttcaagagtatggttac
catctgagaggaaatgaggtgatgttcaatggacacacaggccgaaaagtgaacgcccag
atattcttggggcccacttactatcagcggctgaagcatatggtggatgacaaaatccat
tcccgagcccgaggtcctgtccagattcttgtgcgccaacccatggagggtagggctagg
gatggtggcttgcgttttggcgagatggaacgcgactgccaaatttcccacggagcagcc
cagttcttgcgcgaacgcctgtttgaagtgtcggacccgtacagagcacacatctgcaat
ctttgtggcctgctggccatcgcgaacctgcgcaacaatacctttgaatgcaagggctgc
cgaaacaagacgcagatatcccaagttcgcctcccttatgcctgcaaactcttgtttcag
gaattgatgtctatgtctatagccccacgaatgatggttttgtag
DBGET
integrated database retrieval system
