Rhipicephalus microplus (southern cattle tick): 119166954
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Entry
119166954 CDS
T07403
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear RNA export factor 1-like
KO
K14284
nuclear RNA export factor
Organism
rmp
Rhipicephalus microplus (southern cattle tick)
Pathway
rmp03008
Ribosome biogenesis in eukaryotes
rmp03013
Nucleocytoplasmic transport
rmp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rmp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119166954
03015 mRNA surveillance pathway
119166954
03008 Ribosome biogenesis in eukaryotes
119166954
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmp03019
]
119166954
03009 Ribosome biogenesis [BR:
rmp03009
]
119166954
Messenger RNA biogenesis [BR:
rmp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
119166954
mRNA cycle factors
Stress granule specific factors
119166954
Ribosome biogenesis [BR:
rmp03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
119166954
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NXF_NTF2
LRR_NXF1-5
Tap-RNA_bind
TAP_C
LRR_4
NTF2
LRR_8
LRR_9
LRR_LRWD1
KAR
Rep_Org_C
SnoaL_4
Motif
Other DBs
NCBI-GeneID:
119166954
NCBI-ProteinID:
XP_037274246
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All DBs
Position
4:55084267..55120975
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AA seq
651 aa
AA seq
DB search
MSSRGPRSQGFYGHDDRAGDRGGNRGRGGGGHRGGGRMGNRGGFGAPILKRYNRQKFGGG
PSGGQPGYGRRGGGGNRARFAEEDGDIEMQGGNLPDHMRNRFKPYNNSYNRNRKRRGMPD
RRGGRDVYVPPHLQNKSGEGTWYKVVIPQGKKFGKDFIYREIKARISVPLIPYNFQFDGH
NAVFYIADVPTATAVRNLNRVIDTPSGFKMAITVKGSDLPIVAVDEEVMQSLKLVMSKRY
DATRGYLDLSNFQKDESLKEANLYITFTRPSILSIAIKIIVENVPEVQTLDLSNNKLTTL
YPLGPVQGACKQLRSLNFANNRILKMAELDSMKGMSSVQELILEGNPVCTAYNDKSQYIS
AVRQRFPKVILLDHNELPPPISFDLGLEETIPPSKPSYFPSEDVKQIVVQFLEQYFTIFD
SKSRGGLIDAYHDDAIFSMSSSKLPQTKHDAREFMRDSRNIMKVTNTESRREKLKTGRVN
VVSFLSQLPETRHDPSSFTVDIPLVTPSLMCFTVFGILRVVNNGLIVPQVKSFTRTFFVV
PQGAGFSIINETLFVTGGTDDQIKAYPTPENTLPAPTPTPSPVPTPVLTPAAPLATNERE
SILVQLCAETRMNRAFAERCMEQNEWNLHKALLVFAELSARGAIPPEAFQS
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgagaggaccgcgcagtcaaggcttctacggccacgatgatcgcgccggagat
cgtggtggcaatcgtggacgtggtggtggcggccaccggggtgggggacgcatgggcaac
aggggtggcttcggtgcgcccattctaaagcgctacaaccgccaaaagttcggtggtggc
ccatcaggtggacaacccggctacggccgtcgaggcggtggaggcaaccgggctaggttt
gcggaagaagacggggacatagaaatgcaagggggaaacctacctgaccacatgcgcaac
cgcttcaagccgtacaacaactcctacaaccgcaacaggaaaaggaggggcatgccagac
cggagaggaggccgagatgtttacgttccaccccacctacagaacaagagcggcgaagga
acgtggtacaaagtcgtgattccacaaggcaagaagttcggcaaggacttcatctacaga
gagatcaaggcgaggatcagtgtcccgctcattccttacaacttccagtttgatggccat
aacgcagtcttctacattgccgatgttccaacagctacggccgtgcgaaacctcaacaga
gtcatcgacacaccctccggcttcaagatggccatcacagtcaaaggctccgacctgcca
atcgtggccgtcgatgaggaggtcatgcaaagtctcaagctggtgatgagcaagcgatat
gatgcgactcgcggttaccttgacctgtcaaactttcaaaaggatgagtccctaaaagag
gctaacctgtacatcaccttcacgcggccgagcatcttgtccatagcgatcaagatcatc
gtggaaaacgttcccgaggttcagacgctagacctgtcgaacaacaagttgaccacgctc
tacccactcggtcccgttcagggtgcgtgcaagcagctgcgttccctcaacttcgccaac
aaccggattctgaaaatggctgagctagacagcatgaagggcatgtcgtctgtccaagag
ctcatcctggaggggaaccccgtctgcacggcgtacaacgacaagagccagtacataagc
gcggtgcggcagcgcttccccaaggtcatcctgctggaccacaacgagctaccccctccc
atatcgttcgacctgggcctggaagaaacgattcctccttcaaagccaagctatttcccc
tcggaggacgtgaagcagatcgtggtgcagttcctggaacagtacttcaccatatttgac
tcgaagagcaggggcggcttgatagacgcctaccacgacgacgcaatcttctccatgagt
tcttctaagcttccgcaaacaaagcatgatgccagggaattcatgagagacagcagaaac
atcatgaaggtgacaaatacagagtcgagacgagaaaaactcaagacggggcgggtcaac
gtcgtttcttttctcagccagctgcccgagacgcgccacgaccccagttcgttcaccgtc
gacatcccccttgtgacgccatctttgatgtgcttcacggtgtttggaatcttgagagtc
gtgaacaatggtctcatcgttccacaagtaaagagtttcacaagaaccttctttgtcgtt
ccccaaggtgcagggttttccatcatcaatgaaacactctttgtcacgggtggaactgat
gatcagatcaaggcataccccacacctgaaaacacgctgccggcccctacgccgaccccg
tctccggtgccgactccagtgctcacaccggcagcaccacttgcaacgaacgagcgggag
agtatattggtgcaactgtgcgcagagacgcggatgaacagggctttcgcagaaaggtgt
atggaacagaacgagtggaacttgcacaaggcactcctagtatttgccgaactgagcgct
cgaggagcaatacccccagaggcatttcagagctga
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