Rhipicephalus microplus (southern cattle tick): 119167153
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Entry
119167153 CDS
T07403
Name
(RefSeq) general transcription factor IIH subunit 4-like
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
rmp
Rhipicephalus microplus (southern cattle tick)
Pathway
rmp03022
Basal transcription factors
rmp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rmp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
119167153
09124 Replication and repair
03420 Nucleotide excision repair
119167153
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rmp03021
]
119167153
03400 DNA repair and recombination proteins [BR:
rmp03400
]
119167153
Transcription machinery [BR:
rmp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
119167153
DNA repair and recombination proteins [BR:
rmp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
119167153
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
119167153
NCBI-ProteinID:
XP_037274488
LinkDB
All DBs
Position
4:complement(72179310..72216982)
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AA seq
456 aa
AA seq
DB search
MSLISAGLKCRDLHAYLKTLSPATLDNLYTHPATCLAVFRELPSISRHYIMRLLFVEQPV
PQAVVSSWNEQKYVKDHLEALEALTALHIWTDASLPGGLPGWSLSAVFRKHIQIALLGGG
KQWAVYNALEKDKHGRDAAFLDQYAAERWECVLHFMVGCHTTEGISVDAVRTLLHAGLMK
SEEGEGSSPLITMEGFQFLLMDTASQVWHFVLQYLDTLESRGLNLVECLTFLFQLSFLTL
GKDYSTEGMSESLLVFLQHLREFGLVYQRKRRSGRFYPTRLAINLASGLKETTLRSFEAG
YIMVETNYRVYAYTNSPLQVALLALFCELLYRFPNLVVARLTRESVRQALRSGITSNQII
KFLRMYAHPEALKQTPVIPATIMDQLRXXXXXXXFVFREGVLYSQFISQTDFQLLRNYAS
ELGVLIWDNPSKRVMVVNRNGHDEVKKFWKRHRQDH
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgagcttaatctcagccggcttgaagtgcagagacttgcacgcgtacctgaaaaccctt
tcgccggctactctggacaacctctacactcatccagcaacttgtttggcggtctttcga
gagctgccaagcatatcacgtcattatattatgcgattgctgttcgttgaacagcctgtt
ccccaggctgtggtgtcatcttggaatgaacaaaaatacgtcaaggaccatttggaagca
cttgaggcactcactgcactacacatttggacagatgccagccttcctggtggacttcca
ggctggtcgctgagtgcagtgtttaggaagcacattcagatagcacttcttggaggtgga
aaacaatgggctgtctacaatgctcttgaaaaggacaagcacggaagagatgctgcgttt
ctagaccaatacgctgctgagcgatgggagtgtgtccttcatttcatggtgggttgtcat
acaacagagggcataagcgtagatgcagtccgaacactgctccatgctggactcatgaaa
tcggaagagggcgaaggcagctcaccattgataactatggagggcttccagttcttactg
atggacacagcttctcaagtgtggcattttgtgcttcagtacttggacactctggagtcg
agaggcctgaacctggtggaatgtctaacgttccttttccaacttagtttcctcactctt
gggaaggattacagcactgaaggcatgtcagaatctctgctagttttcctgcagcatctg
agggagtttggacttgtttatcaaagaaagcggaggtcaggtcgtttctacccaactcgg
cttgccatcaacctggcatctggactgaaggagactaccctgcgcagctttgaggcaggt
tacataatggttgagaccaactacagggtgtatgcctacacaaattctccactccaggta
gccctgctagcactgttttgtgagctgttgtacaggtttccaaaccttgttgttgccaga
ctaacaagagagagtgtccggcaagcacttcgtagtggcattacatcaaatcagatcatc
aagtttcttcgaatgtatgcacaccctgaggccctgaaacagacacctgtcatccctgca
acaatcatggatcagcttcgnnnnnnnnnnnnnnnnnnnnnatttgtgtttcgtgaggga
gttctgtacagtcagttcatctcacaaaccgactttcaactcctcaggaactatgcctcg
gagctgggtgtgcttatatgggataatcctagtaagcgggtcatggttgtgaaccgcaat
ggccacgatgaagtaaaaaagttttggaaacggcacagacaagaccactga
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