Rhipicephalus microplus (southern cattle tick): 119167688
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Entry
119167688 CDS
T07403
Name
(RefSeq) nuclear exosome regulator NRDE2-like
KO
K26109
nuclear exosome regulator NRDE2
Organism
rmp
Rhipicephalus microplus (southern cattle tick)
Brite
KEGG Orthology (KO) [BR:
rmp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmp03019
]
119167688
Messenger RNA biogenesis [BR:
rmp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
119167688
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NRDE-2
TPR_14
TPR_2
HAT_PRP39_N
TPR_19
TPR_8
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_7
TPR_12
TPR_1
TPR_9
TPR_10
Motif
Other DBs
NCBI-GeneID:
119167688
NCBI-ProteinID:
XP_037275107
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All DBs
Position
4:complement(192963465..193336550)
Genome browser
AA seq
1024 aa
AA seq
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MRKKFHRKVKNRTVKPCQRACCPTRRACQVRKDKPSSGPQGGVHKKVVEATEEAVPEGKR
RFRFLLGVAGEERFCVDPKPNRSLLAFGCLPFNELAVFPSGWRCDTIPLEAWGGRRKKVL
RYWHPKAFPSSCVANLAQPRLSFAHSERNLVYVPLRDPRALPRTADVDGVDPLRIHDAST
RNYLQGLGAQEGTEQQPTTELLSLLCPEAADKHRMLTRRLREAPEDERAWLDLVAFQDEY
VAAMEEASGVCRTVGRAKAIREKKLQVLEQGLLKTKGSVPLHLHKIQVLLECGEENRAVK
AWEELLRVHPGNSRLWLEHARFLQSETTLSGFEVAAASKGYLRALACFRDMLEGRRATRR
EPLEVERNIVEVARQYGVFLCQAGLWERAVATFQALAELSLCCPSQLREGPLNEALALLE
PFWDSGAARFGDRGARGWDHLMRLSGQAALEAATARHGTEAEDCQQLEDDILSRQTGLAD
AWLRLESLRDLHQWQPYRPELSSEEVTSEDPERMVLFEDVAPALFRLRQPAAMVQLFQAW
CSLLLGMDLHNSQTGFSLAEADCFERLPGINLKMATHFSQVLSFPSGWEVRQGVADFVHE
VLSQAKPHFVDPTLCDELARLALQLARLATTWDSHKRKKCAKAWLADPGSERNLDLWTDY
GLLLIDLGQPKEALAIYEKALDTVSQPGALASCRGDMWLLFATYFNLRMGVLWPEEEVAI
MDTKPFDRDQALLALSWFDSGRKFREVLSSRLQPSALLRASAAIDNRCSDPAGRTAGAVD
VALWMKLFSSGFSAVSTTVSKWLDDCTKDKGERNTRMAVHAAFVRICSYQVQHCNARRAT
LCGALLGALEDVPDATCFMRHWVSLSNGSLGALHARRYLDSLVQKDCSPLAWLVALCFEL
QRAQLLTKYRTPDASFTLPSCRNHVRRVLERAIELVSHRRCPLLWRLYIELELRLGARES
AKAIFYRALQCCPWAKVLYVDGVRYFPECLQEVVDMLVEKGIRLRAPLEELQLLLDHAGQ
PSTV
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atgagaaagaagtttcatcgcaaagtgaagaatcggacggtgaaaccctgccagagagcc
tgctgtccaacgagaagagcttgccaagtgaggaaagacaagccaagctcagggccccaa
ggaggagtgcataagaaagttgttgaggcaactgaagaggctgttcctgaagggaaaagg
cgcttccggtttctgttgggtgttgctggagaagagcgcttctgtgtggaccccaagccc
aatcgcagccttctagcctttggctgcctgcctttcaacgagctggcggtgtttcctagt
ggctggcgatgtgatactataccgttggaggcctggggaggtcgtcgaaagaaggtgctc
cgctactggcaccccaaggccttcccatcttcctgcgtggccaaccttgcccagccaagg
ctgtccttcgctcacagtgaacgcaacttggtgtatgtgcctttgcgagaccctcgagcc
ctacctcggacagcagatgtcgacggtgttgaccccctgcgcatccacgatgcttcaacc
cgtaactatttgcaagggcttggggcacaagaaggcacggagcagcagccaaccacagag
ctgctctcccttctttgtcctgaagcggcagacaagcaccgcatgctcacccgtcgactg
cgtgaagcaccagaagacgagcgtgcctggttggacctggttgcctttcaggacgagtat
gtggcggccatggaggaggcctccggagtgtgccgcactgtcggccgagccaaggcgatt
cgggagaagaagctgcaggtgctggagcagggcctcctcaagacaaagggatcagtgccc
ctgcacctccacaagatacaggtgctgttagaatgtggtgaggagaatcgtgcagtaaag
gcctgggaggagctgctgcgggtgcacccaggaaattctcgcctctggctggagcacgcc
cgctttcttcagtcagagactacgctgtcaggctttgaggtagctgcggccagcaagggc
tacctgcgggccctggcctgcttcagagacatgctcgaggggcggcgggcaacccgcagg
gagcccctcgaggtcgagagaaacattgtagaggtggcgcgccagtatggagtgtttctc
tgccaggctggcctgtgggagcgggcagtggcgactttccaggccctggcagagctgagc
ttgtgctgtccctcgcagctgagggagggccccctgaacgaggccctggccctgctggag
ccattctgggacagcggtgccgctcgctttggggaccgaggtgcccggggctgggaccat
ctcatgcgactcagtgggcaagctgctttggaagcggccacggcgcgacatggcactgaa
gctgaagattgccagcagctggaagacgacattttaagccgacagacaggcttggctgat
gcatggctgcggcttgagagccttcgggacttgcaccagtggcagccataccgacccgag
ctctcctccgaggaagtgacatcggaagaccccgaacgcatggtgctcttcgaagatgtg
gcacccgctttgttccggctgcggcagccagctgcaatggtgcagctgttccaggcctgg
tgctctctcctactcgggatggacctgcataatagccagactggcttcagccttgcagaa
gctgactgctttgagcggctgccaggtattaacctgaaaatggcaacacacttcagtcaa
gtactgagcttcccatcgggctgggaagtacggcaaggcgtcgctgactttgtccatgaa
gttctgagtcaagccaagccacactttgtggatcccaccctttgtgatgagctagcacgg
ttggcactccagttggcacgtttggccacaacgtgggattcccacaagcgcaagaagtgt
gccaaagcctggctggcagatccaggctctgaacgaaatctcgatttgtggaccgattac
ggcctcttgctcatcgacctgggtcagccaaaggaggctctggccatctacgaaaaggcc
ctggatacggtttcacagcccggggcattggcaagttgccgcggtgacatgtggcttctg
tttgccacatacttcaatctacgcatgggggtcctttggcccgaggaagaggtagcaatt
atggatacaaagccattcgatcgtgaccaagcgctgttggctctctcttggtttgactct
ggacgcaaatttcgggaagtgctttcaagtcggctgcagccgtcagcacttctcagggcc
agtgctgccatcgacaaccggtgcagcgatcctgctggccggactgccggtgctgtagat
gtggccctctggatgaagcttttctcttcgggtttcagtgctgtgtctacgactgtgagc
aaatggcttgacgattgcactaaggataagggtgaaaggaacacacggatggcagtgcac
gctgcctttgtacggatttgcagctatcaagtgcaacactgcaatgcccggagggctact
ctctgtggagccctattgggggctcttgaggatgttcccgatgccacctgcttcatgcgg
cactgggtgtcactgtccaatggatccctgggagctttgcatgcgcgcaggtacctagac
agcctggtgcagaaggattgctcacccctggcttggcttgtagcgctctgctttgagctg
cagagggcccagctgttgaccaagtatcgcacacccgatgctagcttcaccttgccgagc
tgccgcaaccacgtgcggcgagttttggagcgggccattgagctggtttcccacagacgc
tgccctcttctctggaggctctacatcgagctagagctgaggcttggggccagagaatcg
gcaaaggcaatcttttacagagctcttcagtgctgtccttgggctaaggtgctgtacgtg
gacggtgtgcgctacttccctgagtgcctgcaagaggtggtcgacatgttggtagagaaa
ggtatccggcttcgtgcacctctcgaagaactgcagcttctccttgaccatgcgggacaa
ccatctacagtctag
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