Rhipicephalus microplus (southern cattle tick): 119169672
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Entry
119169672 CDS
T07403
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein LOC119169672
KO
K15323
tRNA-splicing endonuclease subunit Sen34 [EC:
4.6.1.16
]
Organism
rmp
Rhipicephalus microplus (southern cattle tick)
Brite
KEGG Orthology (KO) [BR:
rmp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rmp03016
]
119169672
Enzymes [BR:
rmp01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
119169672
Transfer RNA biogenesis [BR:
rmp03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing endonuclease complex
119169672
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Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_int_endo
DUF5827
Motif
Other DBs
NCBI-GeneID:
119169672
NCBI-ProteinID:
XP_037276600
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Position
5:complement(87783542..87799982)
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AA seq
575 aa
AA seq
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MSSAPVKLYLQKDRILVWNADDVNKIRCQHRIVGMQVGCFPRCPFQSVLLGLPVQLAMEE
AHLLISKGFCILVENAKLSQPPTVATRSTSRVDKCAEDVYQEQAEAVMAQRKAEIEQQAD
NIVAGLVKKRRGQQVSKKARKKLKKSSSTELSKGNASSFTELSEVQPEDMEAQREAVIAN
VMKSKVSMPSRDITLAPVLYECLRTKASNLVPVELNYPRTDAHKVRCRVFKDLWERGYYM
TVGSKFGGDFLSIRLVDGERVAGQLMRQLRLQVAQLLLEHAQAAQHDVLGLQGARRLDVE
VELVGLALALELGLGAVLVQLGVLALGPLLGPRVGGVSERVVRVVLERHAARGVPLGVLL
AEPFLGVGAGLDLLTFAQLDDEDVLRLAVLVGVVLVARRDGHDARVARLEVGRGHVARLL
VQTLDVERELDRALGAEVGARAVPRVLHLVDDLVARERDQAEPVRYELVVQHGRVGLQLD
PVDRQRRRLGDEDSTQAVRHAQVGVLDEELDVLVRDPLLFHAFGVVVCLGRDHKVAGRDI
VMWGRLGNAVHKTIILATLRDNQVHYISLRWSGEL
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atgagctcggctccagtcaagctgtaccttcagaaagatagaattcttgtctggaacgca
gatgatgtcaacaagattcgatgtcagcatcgcatcgtcggaatgcaggtcggctgtttt
ccgcgctgcccatttcaaagcgtgctgcttggattgccagtgcagcttgccatggaagag
gcgcatttgcttatttccaaaggtttctgtattcttgtggaaaacgcgaaactgagccag
ccgcccacggtcgcgacgaggagcacgtcacgtgttgacaagtgcgcggaggatgtctat
caagagcaggctgaagcagtcatggcgcaacgaaaagccgagatcgagcaacaagcagat
aatattgttgctggtcttgttaaaaaaaggagaggacagcaggtctccaagaaggcaaga
aagaagctcaaaaagagcagcagcaccgagttgagcaaaggtaatgcaagctcttttacc
gagctcagcgaggtgcaaccagaagacatggaggcccagagggaagctgttattgccaac
gtgatgaagagcaaggtgtctatgccatcacgagacatcacactggcacctgtcctgtac
gagtgcctgcgaacaaaggcatcgaacttggtgcctgtagagttgaactacccgaggact
gatgcgcacaaggtgcgttgccgagtgttcaaggatctctgggaaaggggctactacatg
acagtcggatctaagtttggaggagacttcttgtctattcggttagttgatggtgagcga
gtcgcagggcagctcatgcgacaactgcgtctgcaagtcgctcagcttcttcttgagcac
gctcaggccgctcagcacgatgttctcgggcttcagggcgcccgacgactcgacgttgaa
gtagaacttgttgggcttgccctcgctctggaactcggcctcggcgcggtcctcgtccag
ctcggtgtactcgctcttgggccactcctcgggccgcgggtaggtggtgtgtcggaacgc
gttgtccgggtcgtactcgaacgccacgccgcacgtggggttccacttggcgtgctcctt
gccgaaccctttcttggcgtaggcgcgggccttgacctcctgacctttgcgcagcttgac
gatgaggatgtcctccgtctcgccgtactcgttggtgtcgtccttgtggcgcgacgtgac
gggcacgacgcgcgggtcgctcgacttgaggtcggccgtggtcacgtggcgcgtctgctc
gtccagacacttgacgtcgagcgtgaactcgaccgagcactcggtgcagaagtcggcgca
cgtgcagtcccgcgagtactgcatcttgtcgacgatctcgtcgctcgtgagcgggatcag
gccgagccggtgcgctatgaactcgtcgtgcagcacggtcgagttggcctccagctggac
ccagtcgatcgccagcgtcggcgtctcggcgatgaagactcgacgcaggctgttcgccac
gctcaggtcggtgtcctcgatgaagaacttgacgttctcgtccgtgatccgcttctgttc
catgctttcggtgtggtggtgtgtctaggcagggaccacaaagtggccggccgcgacatc
gtcatgtggggccgcctggggaacgcagtgcataagactatcatcctggccacgcttcga
gacaatcaagtgcattacatctcgctgcgctggagtggtgaattgtga
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