Rhipicephalus microplus (southern cattle tick): 119170355
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Entry
119170355 CDS
T07403
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
rmp
Rhipicephalus microplus (southern cattle tick)
Pathway
rmp03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
rmp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
119170355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rmp03021
]
119170355
03036 Chromosome and associated proteins [BR:
rmp03036
]
119170355
Transcription machinery [BR:
rmp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
119170355
Coactivators
SAGA/TFTC/STAGA complex
119170355
Chromosome and associated proteins [BR:
rmp03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
119170355
STAGA complex
119170355
TFTC complex
119170355
SAGA complex
119170355
SLIK complex
119170355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
TFIID_NTD2
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_WDR90_POC16_2nd
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
NBCH_WD40
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
ANAPC4_WD40
Beta-prop_EIPR1
Beta-prop_IFT140_1st
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_Nup120_160
Beta-prop_RIG_2nd
Beta-prop_HPS5
Beta-prop_DCAF12
PROPPIN
WDR54
Beta-prop_SPT8
PEP5_VPS11_N
Beta-prop_NWD2_C
Beta-prop_WDR19_1st
WD_LRWD1
ARM_KNTC1_1st
Mala_s_1-like
Thioredoxin_6
Motif
Other DBs
NCBI-GeneID:
119170355
NCBI-ProteinID:
XP_037277390
LinkDB
All DBs
Position
5:40188419..40201000
Genome browser
AA seq
606 aa
AA seq
DB search
MKKNRNEMVAAAVGRYLKGRQYMDCDSFKKSDVKLQQSVADFALNGTVASETGAKNVLSY
SPVNKDAQAVEQQFSKLKNFIADACEPFKSELTFMLFPMFVHLYLELISNGQKSSAQKFH
SRHRSTFQSSDQYRMITDMLPSITSASDVPSHPHVKEFRENKYSVKLSDDSLEYVLHFLR
DSDNLILLQVFNLYIDIDVQLAHEKMNGDAQALGLQQQLVSSSTAARGSSVDNKQEPPVE
HCKESLASLRQAIKNVKEGAPCIPSICLYAVNDRLSGLCSASQVEDGSLLACGFEDSSIR
LWSLLARPLSTDPPDVDVSRVRLYCDADEMDHYNTPQESDSRVLRGHSGPVYDLDFLPGK
ELMLSCSEDTTVRAWSLKTHCNVAIYRGHSYPVWDLDIGPLGLYFATASKDSTAKIWTLE
RTYPLRILAGHNMDVDSVKFHPNSNYVATGSSDRCLRLWSVQDGRVVRSLPAHRGTIFAL
AFSPDGQLLASAGEDRRIKVWDLGSSALLKELRGHTDAVYSISFSRDGSVLASGGAEPLV
HLWDLRRSVGSSPSDADPNGHMSPEHLASFPTSTSALHLVRYAPRNLLTLVGSAAAGTGA
DISSIS
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaaaacaggaacgaaatggttgctgcagcagtcggtcgctacttgaaaggaagg
cagtacatggactgcgattccttcaagaaatctgacgtgaagctgcagcaaagcgtagcc
gactttgcattgaatggaacggtggcttcagagacgggagctaaaaatgttctaagctac
agccctgtaaataaggacgctcaagctgttgagcagcagtttagcaagctcaagaacttc
attgccgatgcttgcgaacctttcaagtccgaactcacattcatgttgttcccaatgttt
gttcatttgtaccttgaactcatcagcaatggtcaaaagtcttcagctcagaagtttcac
agtcgtcatcggagcacatttcaatcatcggatcaatatcgtatgatcacggacatgctg
cctagcataacctctgcatcagatgtaccttcccatcctcatgtaaaggaattcagagag
aacaagtattcagtaaaactctcggatgacagcttggagtatgttttacattttttgagg
gacagtgacaacctcattttgctacaagtcttcaacctgtacattgacattgatgtacag
cttgcgcatgaaaaaatgaatggggatgcgcaagccttgggcttacagcaacagttggtc
tcgtcatcgacagctgcgagaggtagcagtgttgataacaagcaggaacctcctgttgaa
cactgcaaagaatcattagcctccttgcgccaggccatcaaaaatgtcaaggaaggtgcc
ccctgcattccttccatctgcctctacgcagtaaatgaccgtctgtccgggctctgttca
gcatcacaagtggaggatggcagcctcttggcatgcggttttgaagactcatctattcgg
ctctggagcctgttggcgcgtcccctatcaactgatccacccgatgtagacgtcagcaga
gtcaggctgtactgcgatgctgacgagatggatcactacaacacacctcaagagagtgac
agcagagtgctgcgaggtcatagcggccctgtgtatgaccttgacttcctgcctggaaag
gagttgatgctatcgtgctccgaagacactacagtgcgagcatggagcttaaaaacgcac
tgcaatgttgctatctacagaggtcactcatatcctgtctgggaccttgatattgggcca
ttggggttgtactttgccacagcatcaaaagacagcacagcgaagatctggacactcgag
aggacgtacccactgaggatactagctggccataacatggacgtggacagcgtgaagttc
catcccaacagcaattacgtggcgactggttcgagtgaccggtgcctgcggctctggtca
gtgcaggatggccgggtggtgcgcagcctgcctgctcaccggggaaccatctttgctctc
gccttctcacctgacgggcagctgcttgcttcagccggtgaggaccgcaggatcaaagta
tgggacctggggagctccgccttgctcaaggagctgcgaggtcacacagacgcagtctac
agcatctcgttcagtcgcgatggctctgtgcttgcctctggtggcgcagagccacttgtt
catctctgggaccttcgacgcagtgtgggatcttcaccgagtgatgcagaccccaatggc
cacatgtcacctgagcatctggcaagtttccccacatccacatctgcacttcatctggtg
cggtacgcacctcgaaacctcctcaccctcgttggttctgcagcggctggtaccggtgcg
gacatttcttccatttcttga
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integrated database retrieval system
