Rhipicephalus microplus (southern cattle tick): 119170550
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Entry
119170550 CDS
T07403
Name
(RefSeq) general transcription factor IIH subunit 1-like
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
rmp
Rhipicephalus microplus (southern cattle tick)
Pathway
rmp03022
Basal transcription factors
rmp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rmp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
119170550
09124 Replication and repair
03420 Nucleotide excision repair
119170550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rmp03021
]
119170550
03400 DNA repair and recombination proteins [BR:
rmp03400
]
119170550
Transcription machinery [BR:
rmp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
119170550
DNA repair and recombination proteins [BR:
rmp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
119170550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH_TFIIH
BSD
Motif
Other DBs
NCBI-GeneID:
119170550
NCBI-ProteinID:
XP_037277638
LinkDB
All DBs
Position
5:72237375..72299560
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AA seq
535 aa
AA seq
DB search
MGTSSEDVLLMVSNVRYKKNNGTLYLMAERIAWMLEGKDSFSVSHKYADIKMQKISPDGK
AKVQLQVVLHGAEGSATTFHFVNPLGTQAQLEDRNSVKELLQQLLPKFKRTLNSDLEEKN
RILQEDPRLFELYRNLVVSRVITPEEFWANHAPKKTGSTQASPSAQPVGVSAAFLVDVQP
QTDGTEGLKYNLTADIIDSIFRTYPAVKRKHLENVPERMTESEFWTRFFQSHYFHRDRLH
TSTRDLFSDCARSDDKDIQEAISKGFRDPFVDISSFQDIESFNERDLPGSVASAGSVANH
SMIRRFNHHSMMVLRACGNDKDAPMELSSQEEDPLAIKHARVWEKTQLEDLLGNNGSCSG
FPVRLGQGERHQRGPTAGDNSTTPEDRVAPSVLQRELSNWTPSGQGILPASAALSVLGEL
SPGGALMKNAQQVPLKDTVSLDVQRDLRSIYTAQFELLRHFWTCFPSTSAQLEEKAINMR
STLERFQYAQLQPFRDKLLREHHTPDLASHLDDLLQAAYTKFSSWQSRRLSLGRR
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgggcacgtcgtccgaagacgtccttctcatggtcagcaacgtgcgctacaagaagaat
aacgggaccctctatttgatggcagagcgcattgcgtggatgttggaaggcaaggattcg
ttttccgtgagccacaagtatgcggacatcaaaatgcaaaagatatcccccgatggcaag
gccaaagtgcagcttcaagttgttctgcatggcgcggagggctctgcaaccacttttcat
ttcgtcaatcccctgggcacccaggctcaactggaagacaggaacagcgtgaaggagctg
ctgcagcagctactgccaaagttcaagaggaccttaaattctgacctcgaagaaaaaaac
aggattcttcaggaagacccacgcctgttcgagctgtacaggaatttggttgtcagccgt
gtcatcaccccagaagagttttgggccaaccatgctcctaagaagactggaagcactcag
gcgtccccttcggctcagcctgtcggagtttcggcagcattcttggttgatgtgcagccg
cagacagatggtacagaaggcctcaagtacaacctcacagctgacatcatcgactccata
tttaggacatatcccgctgtgaagcggaaacacctggaaaatgttccagagcgcatgacc
gaatcggaattttggacgcgcttcttccagtcccattactttcaccgagacaggcttcac
acgagcacacgagacctgttctctgactgcgctcgcagcgacgataaagatatacaggag
gctatctcgaaaggattccgggatcccttcgttgacatctcatctttccaagacatagaa
tcatttaatgaacgggacctgccagggtcagtggcatctgctgggagcgttgcgaatcac
tctatgattcgtagattcaaccatcattcaatgatggtcctgcgagcctgtggtaatgac
aaggacgcccctatggagctttcgtcccaagaagaagatcctcttgctatcaaacatgcc
agagtgtgggaaaagacacagctggaggacttattgggcaacaatgggagttgcagcgga
ttcccggtgcgactgggccagggcgagcgacaccagcggggacctacggcgggcgacaat
tcgacaacgcctgaggatcgcgtggcacccagcgtccttcaacgagagctgtcgaactgg
acgccctcgggacaaggaatattgcctgcctcggcggccctgtcagtcctgggtgaatta
tctcccggtggtgctcttatgaagaacgcacagcaggtgcccctcaaagacacagtgagc
ttggacgttcagcgagatcttcgcagcatttacacagcccagttcgagcttctgcggcac
ttctggacgtgcttccccagcaccagtgcacagcttgaagaaaaggcaattaatatgagg
tccaccctggaacgcttccagtatgctcaacttcaaccattccgagacaagctgcttcgt
gagcatcacactcctgatttggcgagccacctggacgaccttctacaggcagcctacacg
aagtttagcagctggcagtctcggcgcttgtcgcttgggcgcaggtga
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