Rhipicephalus microplus (southern cattle tick): 119172879
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Entry
119172879 CDS
T07403
Name
(RefSeq) transcription elongation factor SPT6-like isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
rmp
Rhipicephalus microplus (southern cattle tick)
Brite
KEGG Orthology (KO) [BR:
rmp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rmp03021
]
119172879
03036 Chromosome and associated proteins [BR:
rmp03036
]
119172879
Transcription machinery [BR:
rmp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
119172879
Chromosome and associated proteins [BR:
rmp03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
119172879
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
HTH_44
SPT6_acidic
Tex_central_region
SH2
S1
Spt6_S1
HHH_9
HHH_3
Tex_YqgF
S1_RRP5
Tex_N
Motif
Other DBs
NCBI-GeneID:
119172879
NCBI-ProteinID:
XP_037279921
LinkDB
All DBs
Position
1:complement(131819401..131885868)
Genome browser
AA seq
1730 aa
AA seq
DB search
MADFLESEAEESEDEEVTGKRPLVDDDDEEEEEEEDDDERLREEMKDLINDEEEEVEEDS
DEDVGGKKKRRHHDDFDDNLEDEDYDLIEENLGVKVQRKKKFKRVRRIEDEESDNEESKD
STNRDAIATELFEGSDAEAAAEQDEERREGEEEEREGSGSELESDPDDFIVDDDGQPITK
SKKKRHIKYTDHALQEAQDIFGVDFDFDEFSKYQDDYDEEMEEEEYEDEEEEGENRPRPK
KTSRKRQTKKSIFEVYEPVELERGHFTDRDNEIRTTDIPERFQLRAVPVTPAPEEEIARE
AEWIYKQAFGNPTISVQSAVDEGAKGSSAASTLAGRHQPPAGRKNVTAVAKIAEALKFMR
NQLFEVPFIAFYRKEYVEPDLNINDLWTVYKWDEKWCQLQQRKKNLQQLFQRMQEFQCDQ
ILQEDLDKPLPDNVRPIDENDFQRLKEVQTPEELRDVYQFFLLYYAQDIPEMQETIRKRK
RKEAEAENGENDESAQAKEADDADDENQRLKHPVRKRLFDICRDMGLDGLAKKFGLTPEQ
FGENLRDNYQRHEVDQFPVEPLVAATDFVSKRFTTPEEALKAARYMVAVMIAMDPLVRRC
IRETFFERAKISISPTKKGLKEIDENHPCYPVKYLKNKPVRDLIGAQFLNMTQAENEKLL
KITISMDGSTQSNPGVYLDEIKQLYYRDEFSNNVQEWNNQRSEALGFALSKFLYPSFEKE
LKAQLLVEAQEGIIKACTRKLYNWLKVAPYQVDAQMEEDEDFDTRDGIRVFAIAYENNWE
VPAFGALIDGTGEVMEYIRLPHLLKRKNAWRERERELKELDLKVLRKFIRNKKPHVICVG
AQSREALMVVEDIKGVVADLAENEQMPLINVELQDNDLAMVYMNSKKAENDFRDYPLLLR
QAISLARRMQDPLVEFSQLCTPDEEIFCLKYHPLQDLVPRDDLTNALNLEFVNRTNEVGV
DINLAITHVHTSFLVQFVCGLGPRKGASLLKTLKQAHQRLESRTQLVTVCHMGPKVFINC
AGFIKIDTTSFENSTNAYVEVLDGSRVHPEAYEWARKMAVDALEYDDVTEDVNPAEALEE
ILENPEKLRDLDLDAFAVELERQGYGNKSITLYDIRAELNHRYKDLRTPFRPPNPEETFN
MLTKETPQTFYIGKMVTCQVVGIARRKPHGQQLDQANPIRNDDTGLWQCPFCLKNDFPEL
SEVWNHFDAGSCPGQSMGVRVRLDNGVNGFILTKYISDKKVTNPEERVQIGMILHCRITK
IDIERFTVDLTCRSSDLSDVNNEWRPAKDLYYDYESEEKDRKVDDDSKKKQNRQTYVKRV
IVHPSFHNISYKEAEKLLSTMDQGDVIIRPSSKGVDHLTVTWKVYDGILQHIDVKEQGKE
NAFSLGSSLMINNEEFEDLDEIIARHVQPMASFARDLTTFRYFRDAEGGKREVIEKLLTE
EKKRNPSKIHYFVSASREFPGKFMLSYLPRVKVRHEYVTVTPEGFRYRQQMFHSVGSLFR
WFKEHFRDPIPGTPSSGVTAVRTPMGQSSYIGATPSINISNVDPQAIQRAAANISSHMFA
SLSQVAGQTPSFPTPYGGTYANAYPYHQQPYTPSQAMATPLVTPSYHHAVATPSVTPRYP
QTPQTSWAAAQQTPRGAHTPRHTPAAAAAAAQAVIQANPIPTVVSGTKSTGNPSIADWKR
MAEQWAKQRMEQQEASNRAAARRTPTTGASPSPMIESTPAGDATPLIDEQ
NT seq
5193 nt
NT seq
+upstream
nt +downstream
nt
atggcagacttcttggagagcgaggccgaggagtcagaggatgaggaggttactggaaaa
cgtccgttggtggacgatgatgatgaggaagaggaggaagaagaggatgatgatgagagg
ctgagagaggagatgaaggatctcatcaatgatgaagaggaagaagttgaagaagactca
gatgaagacgtagggggcaaaaagaaacggcggcatcacgatgactttgacgacaaccta
gaagatgaagattacgaccttatagaggagaacttgggagtcaaagtacagaggaaaaag
aaattcaaacgtgtaaggaggatagaggacgaagagagcgacaatgaagagagtaaggac
agcaccaatcgtgatgccattgccaccgagctgttcgaaggatccgatgcagaggcagcc
gcagaacaagatgaagagagaagagagggagaagaggaggagagggaaggctcgggttct
gagctagagtctgatcccgatgacttcattgttgacgacgatggccagcctatcacgaaa
agcaagaagaagaggcacatcaagtacaccgaccatgccctgcaggaagcccaggacatc
ttcggtgtcgattttgattttgatgagttctccaagtatcaagatgattatgatgaagaa
atggaagaggaagagtatgaggatgaagaggaggaaggggaaaatcgaccacgccccaag
aagacgtcacgcaagcgccagacaaagaagagcatcttcgaggtatacgaaccggtggag
ttggagcgaggtcacttcactgaccgggataacgaaatacggacaacagacatacccgag
cggttccaactgcgggccgtgccagtgacgcctgcacccgaggaggagattgcgcgcgag
gctgagtggatttacaagcaggcatttgggaacccaacaatctcggtgcagtcggctgtc
gacgaaggtgctaagggttcttccgccgcttccaccttggcaggtcgacaccaacctcct
gcgggccgcaaaaatgtgacagctgtggccaagattgctgaggcactgaagttcatgaga
aatcaacttttcgaggttccattcattgccttctaccgaaaagagtacgtggagcctgac
ctcaacatcaacgacctctggacagtctacaagtgggacgaaaagtggtgccagctacag
cagcgcaagaaaaacctgcagcagctgttccagcgtatgcaggagttccagtgtgatcag
atactgcaggaggacctagacaagccactgccagataacgtgcggcccatcgacgagaat
gacttccagaggctaaaggaggttcagacgcccgaggaactgcgcgatgtgtaccagttc
ttcctgctgtactatgcacaagacatacccgagatgcaggaaacgatccgcaagcgcaaa
agaaaagaggccgaggccgagaacggtgaaaatgacgagagcgcacaggctaaagaagct
gatgatgcggacgatgagaaccagcggttgaagcatcctgtccgcaagcgcctttttgac
atttgtcgtgacatgggtcttgacggccttgcaaagaagtttggcttgacgccagagcag
tttggcgagaatctccgagacaactatcagcggcacgaggtggaccagtttccggtggaa
cccctggtggctgctactgattttgttagcaaacgcttcacaacacctgaagaagctctt
aaggcagcacggtacatggtggcagtgatgatagccatggatcctctcgtacgaaggtgc
atacgtgagaccttcttcgagagggccaagatcagcatttcacccacgaaaaaaggcctg
aaggaaatcgacgagaaccacccatgctatccagtcaagtacctgaaaaacaagcctgtt
cgggacttaatcggagcacagtttctcaacatgacgcaggcagaaaacgagaagttgctc
aagatcacgatttccatggatggaagcacccagtctaatcccggtgtttaccttgatgag
atcaagcagctctactatagggacgagttcagcaacaacgtccaggagtggaataatcag
cgcagcgaggctctcggctttgccctgagcaaatttctctacccgagttttgagaaggag
ctcaaggcacagctgctcgttgaggcgcaggaaggcatcatcaaggcttgcacccgcaaa
ctgtacaactggctaaaggtggccccctaccaggtggacgcccaaatggaggaggacgag
gacttcgacactcgtgatggcattcgggtgtttgccattgcttacgagaacaattgggaa
gttcctgcctttggtgctctcatagatggcactggtgaagtgatggagtacatcaggctt
ccccatttgctcaaaagaaaaaatgcctggcgggagagggagcgtgagctgaaggaacta
gatctcaaggtcctcaggaagttcattcgcaacaagaagcctcacgtaatctgtgttgga
gcccaatccagagaggcacttatggttgtcgaggacatcaaaggcgtagtagctgatcta
gccgagaatgaacagatgcccctgatcaatgttgagttgcaggacaatgacctggcaatg
gtctacatgaactcaaagaaagcagagaacgatttccgagactacccgctgctgctgcgg
caagccatctcgctggccaggcggatgcaggatcccttggttgagttctcgcagctctgc
acgccagacgaagagatcttctgtctcaagtaccacccactgcaggacttagtgccaagg
gatgacctcaccaatgcgctgaacctggagtttgtcaaccggaccaacgaagtcggcgtg
gatatcaacctcgccatcacacacgtgcacacatccttcctggtgcagtttgtgtgtggc
ctaggacctcgcaagggtgcctcattgctcaagacactaaagcaagcccaccaacgcctc
gaaagcagaacccaacttgtgacagtttgccatatgggacctaaagtgttcatcaactgt
gcaggctttatcaagatcgacacaacttccttcgagaacagtactaatgcctatgtggag
gtgctggacggctcgcgggttcatccagaagcttacgagtgggctcgcaagatggctgta
gatgccctggagtatgacgatgtcaccgaagatgtgaaccctgccgaagctctggaggaa
attctggagaaccccgaaaagctcagggacttggatctcgacgcgtttgcggtggagctt
gaacgacagggatacggcaacaagagcatcacgctgtatgacattcgagcggaattgaat
cataggtacaaagacctgcgcactccattccggccccctaaccccgaagaaacgttcaac
atgctcacaaaagagaccccacagaccttctacattggcaaaatggtgacgtgtcaggtg
gtgggcattgcacgtcgaaagcctcacggacagcagctggatcaggccaatccaatccga
aatgacgacactggcctttggcagtgccccttctgcctcaagaacgacttccctgagctg
agtgaagtgtggaatcactttgatgccggcagctgtcctggacagtctatgggagtgcga
gtgcgcctggacaatggggtgaatggctttattctgacaaagtacatcagtgacaagaag
gtgaccaatcctgaggagagagtacagattggcatgatccttcactgcagaataacaaag
atcgacattgagaggtttacagttgatctgacttgccgatcttcagacctttctgatgtc
aacaatgagtggaggcctgcaaaagacctgtactatgactatgagtctgaagaaaaggac
aggaaggttgatgatgactctaagaagaagcagaatcggcagacgtacgtgaagcgtgtg
atagttcatccttcgttccataatatctcttacaaggaggctgagaagctgctcagcact
atggatcaaggtgatgtgatcattcgtcctagcagcaagggtgttgaccacctgacagtg
acatggaaggtgtacgacggcattttgcagcatattgatgtaaaggagcaggggaaagag
aatgccttcagtctagggtcttctctgatgatcaacaacgaggagtttgaagacctggac
gaaatcatagccaggcacgtgcagccaatggcaagctttgcacgtgacttgacaacgttt
cggtacttccgggatgccgaaggtggcaagcgagaggtgattgagaagctcctcactgag
gaaaagaagcgcaatccttccaagatccactactttgtatcagcctcgcgagagtttcct
gggaagtttatgctttcctacctgccacgagtcaaggtccgccacgagtatgtgacggtg
acccccgagggcttccgctaccgccagcagatgttccactctgtgggctccttgttcagg
tggttcaaggaacacttccgggaccccatcccgggaacgcccagcagcggcgtgactgca
gtgcgcacaccgatgggccagtcgtcttacatcggcgccacgcccagcatcaacatttcg
aatgtcgaccctcaggctattcaaagagcagcagccaacatttcgagccacatgtttgcc
tcgttatctcaagtggccggccagacgccatcattcccaacaccatacggcggaacatat
gcgaatgcgtacccttaccaccagcagccgtacacaccttcacaagcgatggcaacccca
ctggtgaccccatcgtaccaccatgcggtagccacaccatcggtgacaccgcgttaccca
cagaccccacagacttcgtgggcggctgcccagcagaccccacgaggtgcgcacacacca
cggcacacgccggctgcagctgctgcggctgctcaagcggtcatccaggccaaccccata
cccaccgttgtgtctggtaccaagagcacaggcaacccatcaattgccgactggaagcgc
atggcggagcagtgggcaaaacaacgcatggagcagcaagaagcgtcaaaccgcgcagcc
gcacgtcgtacgcctacaactggcgcatcgccgagccccatgatcgaatccactccagcc
ggggatgccacaccgctcatagacgagcagtag
DBGET
integrated database retrieval system
