Rhipicephalus microplus (southern cattle tick): 119174611
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Entry
119174611 CDS
T07403
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent DNA/RNA helicase DHX36-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
rmp
Rhipicephalus microplus (southern cattle tick)
Pathway
rmp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rmp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119174611
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmp03019
]
119174611
03012 Translation factors [BR:
rmp03012
]
119174611
Enzymes [BR:
rmp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119174611
Messenger RNA biogenesis [BR:
rmp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
119174611
Translation factors [BR:
rmp03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
119174611
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
HA2_C
HA2_N
nSTAND3
AAA_19
ATPase
AAA_22
ResIII
T2SSE
AAA_23
AAA_16
PhoH
NACHT
TsaE
Motif
Other DBs
NCBI-GeneID:
119174611
NCBI-ProteinID:
XP_037281497
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All DBs
Position
1:complement(158623745..158683433)
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AA seq
943 aa
AA seq
DB search
MSFHERRGGRHGRGWGRGSGSSRGGSGKGKRPSHIPEGLRGKEIGLYFARRGRARKVWAD
RHQKVAVSIDYQTQRELKQLIRCISLEEGPSHKRLESINTVAVDYLSNAPSCFDPENGVV
KLKIERDTALDEKLCQNMQAKAQLREYQNMLDFRKKLPAYTMREEIIELIERNRVVVISG
ETGSGKTTQVPQFILDSYIEKGLGSLCKIICTQPRRISAISVAERVAAERAERCGESAGY
QIRLECRAPRDRGSILFCTTGILLQQLQSDPYIVSASHVILDEVHERDLQTDFLSIILKD
LLVVRPDLCVILMSATINAEMFSEYFGNCPRLEIPGITFPVDVIYLEDILEHTGYRGNSL
FDGTSAVGRKDRRKFEESIEDIMPFIRSLEGKYSNKTLGTLSEWNEMRIDLDLVHALISE
ICAKKPEGAILVFLPGWEQINDLNKLLTADRYLRGSLIIPLHSMMPTVNQRQVFDRPPAG
VRKIVLATNIAETSITINDVVYVIDCGKIKMSNFDVDKNLATLNAEWVSRANAQQRKGRA
GRVQPGVCYRLYTSWRESQLEAYQLPEMLRTRLETLILKIKILKLGSAEAFLQKAINPPS
SEALHLSLQFLITLKALNEDETLTPLGYHLAKLPLDPQTGKMIIMASIFSCLDPILTVAA
SLSFKDAFMVPLGKEKLVEKVKKQFAGDSKSDHIMLVNVFSQWEEAVRHRNGNQFCYENF
LSWNTLKMLSNMRQQFAEYLQELNFMNSKNIKARELNQNSDNLKVLQAVICAGLYPNVAK
GSFNKSKRLMRCSTKTDAKTSLHPKSVNVGENGFDTQWFVYYTKIRSTRTFLHDITPVYP
IPLLLFGGFFKHSGDTITLDDWITIHCDYDLAELVQDLRQEFDRILEKKITAPGLEAGTM
SPNQRRLLSAIIGVLSRETTDVPEVPDYFDDDDDADVPGIDET
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttcatgagagacgtggaggacggcatgggaggggatggggcagagggtcaggc
tcaagcagaggtggttctggcaagggtaaaagaccctcccacattcctgaaggtctgcga
ggaaaggagatcggcctttactttgcccgcagaggacgtgctcgaaaagtgtgggcagat
cgtcaccagaaggttgccgtgtctattgattatcagactcagcgagagctaaagcagctc
attcgctgcattagcctggaagaaggcccaagtcacaagcggcttgagtcaattaacacc
gtggcagtggactacctgtcaaatgccccatcatgctttgatccagagaatggtgtcgtc
aaactgaaaatagagcgtgacaccgcgctggatgaaaagctttgccaaaacatgcaagcc
aaggcgcagttgcgggaatatcaaaacatgctcgacttcaggaaaaagctgcctgcctac
accatgagagaggaaataattgaactgattgagagaaatcgggtcgtggtcatcagcggt
gaaacaggatctgggaaaactactcaggtcccacagtttattctggactcatacattgag
aaaggcctggggtcactttgcaagatcatctgcacgcagccacgccgtatcagcgcaatc
tccgtggcagagcgtgtagcagccgagcgagcggagcggtgcggtgaatcggctggttat
cagatacgactggaatgtagagcgcctagagatcgtggctccatcctcttctgcaccaca
ggaatcctcttgcagcagcttcagagcgacccgtatattgtgtctgcttctcacgtgata
ctcgatgaggttcacgagcgagacctgcagaccgattttctcagcatcatcctcaaagac
ttgctcgtcgtgaggcctgacctatgcgtgattctcatgagcgccaccatcaatgcggaa
atgttctctgaatactttggtaactgcccacggttggaaatacctggcataacatttccc
gtggacgtcatctacctggaagatattctcgaacatactgggtaccgaggaaacagccta
ttcgatggcacttctgctgttggaaggaaagacagaagaaagtttgaggaatctattgaa
gatattatgccatttataagaagcctcgaaggaaagtattcaaacaaaaccttgggcacc
ttgtcagaatggaatgagatgcgaatagacttggacctcgtgcatgcattgatctcggag
atctgtgccaagaaacctgaaggtgcaatactagtcttcctaccgggatgggagcaaatt
aacgacttgaacaaactcctgacagctgaccgatatcttagaggttcactgataattccc
ctgcactctatgatgccaactgtcaaccagagacaagtgtttgataggcctcctgctgga
gtgcgtaaaattgtcctggctactaacatagccgaaacaagcatcaccatcaatgatgtc
gtgtacgtgattgactgtggaaaaatcaagatgagcaactttgatgtggacaaaaacctt
gccaccctgaatgctgagtgggtgtcaagggcaaacgctcagcagcgcaaaggacgagct
gggagagtgcagccaggcgtgtgctaccggctgtacacttcctggcgagagtctcaattg
gaggcctaccagctgcctgagatgctccggaccagactggagacactcattctcaagata
aagattctgaagctcggaagtgccgaagctttcctacaaaaggcaataaatcctccttcc
tcggaagcattgcatctctctcttcagtttttgattacactgaaagccttgaatgaggat
gaaacactgactcctctgggctaccacttggccaagctgcccttggatcctcagacgggc
aagatgatcatcatggcatccatcttctcttgcctcgaccccatcctcacagtggccgct
agcttgagcttcaaggatgccttcatggtgccactgggaaaggagaagcttgtggaaaaa
gtaaagaagcagtttgctggagacagcaagagtgaccacataatgctcgtcaatgttttt
tctcaatgggaagaggcggtacggcatcgcaatggcaatcagttctgctatgaaaacttc
ctttcgtggaacacgctcaagatgctctcgaacatgcgacagcagtttgccgagtacctg
caggagctgaacttcatgaactcaaagaacatcaaggcccgagagttgaaccaaaattct
gacaatttgaaagttttacaagctgtcatctgtgctggactgtacccaaatgttgccaaa
ggaagcttcaataaaagtaaaagactcatgagatgctccacaaagaccgatgcaaagaca
tcgctacacccaaagtctgtaaacgttggcgaaaatggctttgacactcaatggtttgtg
tactacaccaaaattcgatctacaaggacgtttttgcacgacatcactccagtctatccc
attccactgctgctatttggaggctttttcaagcacagcggagacactatcacacttgat
gattggatcaccattcactgcgactatgatcttgcggagcttgtgcaggacttgcggcag
gagtttgatcgcatccttgaaaagaaaatcactgcccctgggctggaggccgggaccatg
tcacccaaccagcggcggctgctttctgccatcatcggagtcctgtcacgggagaccact
gatgtgcccgaggtgcccgattattttgatgatgatgacgacgcggatgttccaggcatt
gatgaaacctag
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