Rhipicephalus microplus (southern cattle tick): 119174744
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Entry
119174744 CDS
T07403
Name
(RefSeq) LOW QUALITY PROTEIN: regulator of nonsense transcripts 2-like
KO
K14327
regulator of nonsense transcripts 2
Organism
rmp
Rhipicephalus microplus (southern cattle tick)
Pathway
rmp03013
Nucleocytoplasmic transport
rmp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rmp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119174744
03015 mRNA surveillance pathway
119174744
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmp03019
]
119174744
Messenger RNA biogenesis [BR:
rmp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
119174744
mRNA cycle factors
P-body specific factors
119174744
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
119174744
NCBI-ProteinID:
XP_037281680
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Position
7:143898527..143930639
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AA seq
1205 aa
AA seq
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MTSSLPMTTPLTRCLNGPTVLPPEEPSEEVALSTVEDNAATVEESEKAILDAYVMEIQER
LNFKSELRSKNLAASGNRPEEAFFSRLDSNLRKNTAFVKKLKTISEAQRDSLLKDMAGLN
LTKYISEVAAAIVEAKLKMSDIQTAIIVCSSLHQRYAEFSTQLLENWLKALPLKKDDKAT
NLSKIRVDLRFFAELLACGVFTQKEGLPVLRNLLTFLTSSDREEHNNLNILISFCKHCGE
DFAGLVPRRIRILAQKYIRDVPVSDLLTPDKQKSLLSILREYYRSLCRHLLRDHQNLRGI
EAHNRRVLQTKGELSGEQKEKCEAAHVAFQKLLSGTQQFADVLDEDVPNLPLEEISTMET
DAATLDVHNRFKGGELDGSSSLWEDEESRSFYENLPDLKAFIPGILFKDSAQAATTSTVT
TVEEPVDLSLEEDLQKLEMECALEIEEEKENAHLDNDKIEEKDLTETLLQEIEAPDEEPT
AGSGPGTANKLLLDGFLNSLLHCVSREMVDQAAEQFCMSLNTKPNRNKLIKALFLVPRTR
LDLLPFYARFVATLAPCMPDVATDLVGMLKQDFKFHLKKKDQINIESKVKTMRFIGELVK
FNIFPKVDALYCLKNLLLDFSHHYIEMACNLLETCGRFLFRSPESHQRTKVYLEQMMRKK
AVQALDSRYTTMIENAFYYCNPPEAPMSIRAVRPPLHEYIRKLLYKDLTKSNTEKILRQM
RKLDWEDPEVCAYATKCLVAIWNVKYYNIRCMANLLAGLVAYHEIVGPQVVDGILEDIRL
GMEVNHPKYNQRRVSVVHYLGELYNYRMVESSVIFKVLYSFITFGVNLNGSPSALDPPDS
LFRIRLVCILLETCGQYFNTGSSKKKLDCFLVFFQQYYWQKKSSDTYGEENLFPVTVDYL
VKDTLLPLRPKMKLCESVEEATAAVEELMSELKPKLSEYLSAPAAGGEDGDGNKAKDLEN
LSPIQEVEEEPDDENHSGECSDQDGDVEGDGDTDVYSGSQSQPLEDEVGSSSEDEAGNLE
EDPGSSQQDVTLVGQRPRRAPCPEDDDFMAAFDKMLSESILHRSQDSVKPQADIVIPMSL
KGTGQQKKTYSNLLEKKGEEDKNTMNFILMTRKGNKPQFKSLEVPVSSELAQNLKDREEA
ERAEKEQVKMLTLNINERQEEEDYQEMLAAQQRPVVLNLNRDRRHKYQHPKGAPDADLIF
GNKKR
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
atgacatcatctctgccaatgacaactccgctgacaaggtgtctaaacgggccgacagtc
ttgcccccagaggagccatcggaagaagtggcactcagtacagtggaagacaatgctgcc
accgtagaagaaagtgaaaaggctatccttgatgcgtatgtgatggaaattcaagagaga
ctcaacttcaaatcagaactccggagcaagaacttggcagcatccggcaatcgtccagag
gaggcattcttcagcaggctagactccaatcttcggaaaaacactgcgtttgtaaagaaa
ctgaaaactatctcggaagctcagagagactctctcttgaaggacatggctggcctgaat
ctgaccaagtacatcagtgaagtggcggctgccatagtggaggccaaactgaagatgtcc
gacatacaaacagccataattgtgtgctcatctctgcatcagcgatatgcagagttttcg
acacagctgctcgagaactggctcaaggcactccctctaaagaaggatgacaaggctacc
aatctgagtaagatcagagtggacttgagattctttgctgagctgcttgcctgtggagtg
tttacccaaaaggaaggccttcctgtgctaagaaacttgctgacatttctaacaagtagc
gaccgtgaggagcacaataatttaaacatactgatcagcttctgcaagcactgtggtgag
gacttcgctggattggttcctcgcaggattcgcatccttgctcagaagtacattcgggac
gtcccagtgagcgaccttttgacgccagacaagcagaagagccttctgagcatcttacgc
gagtactaccggtcactgtgccgacacctgctgcgtgaccaccagaatcttcggggcatc
gaggcacacaatcggcgtgtgctccaaaccaaaggggagcttagcggagagcagaaggag
aagtgcgaagctgctcacgtggccttccaaaagctgctctccggaactcagcagttcgca
gatgttttagacgaagatgttccaaacttgccgctcgaagaaatttctacaatggagacc
gacgccgcaactctcgacgtccacaataggttcaagggtggagagctggacggaagcagc
tcgttgtgggaagacgaggagtctcgcagcttttacgagaatctccctgatctcaaggcc
ttcatacctgggatcttgttcaaggacagtgcacaggctgcgaccactagcacggttacg
acagtggaggagcctgttgatctctctttggaagaagatttgcaaaaattggaaatggag
tgtgccctcgaaatcgaagaagaaaaggagaatgcccacctggataacgataaaatagaa
gagaaggacttgaccgagacgttgctgcaggaaatcgaagcgcccgatgaagagccaaca
gctggttctgggccgggcactgccaacaagcttctcttggatggtttcctaaactcgtta
cttcattgcgttagccgggaaatggtcgatcaggctgcagaacagttctgcatgagcctc
aacaccaaacccaatcgtaacaagctgatcaaagccctcttccttgttcctaggacaagg
ctggacctgttgcccttttatgctcgatttgtggccacccttgccccatgcatgccagat
gtggccaccgaccttgtcggcatgctcaaacaggacttcaagttccatctgaaaaagaag
gaccaaatcaatattgagtctaaagtgaagaccatgagatttataggagagctcgtgaag
ttcaatatattccccaaagtcgacgctctctactgtttaaagaatctcctgctggatttc
agtcaccattacatagagatggcttgcaacctcctcgaaacgtgtggtcgttttctgttc
cggtcgcctgagtcgcatcagaggacgaaagtttacttggaacaaatgatgcggaagaag
gctgttcaggcattggacagccgatacaccaccatgatcgagaatgccttttattactgt
aatcctcctgaagcacccatgtctatccgtgctgtgcgcccaccacttcacgagtatatt
cgcaagcttctctacaaggacctcaccaagagcaacaccgaaaagatcctccgtcagatg
cgcaagctggattgggaagaccccgaggtgtgcgcctatgccaccaagtgtctggtcgcc
atttggaacgtcaagtactacaacattcggtgtatggccaacctcctggcgggcctggtt
gcatatcacgaaattgttggccctcaggttgtggatggtattctggaagacatcaggctt
ggaatggaggtcaatcacccaaagtacaatcagcggagagtgagcgtggtgcactacctc
ggcgagctttacaactaccgcatggtcgagtcgtccgtaatcttcaaagttctctattct
ttcatcacttttggtgtcaacctcaacgggtctccaagtgccttggatccaccggacagc
ctgttccgtatacgactggtctgcatcttgcttgagacttgcggacagtacttcaacaca
gggtcttccaagaagaaacttgattgcttcctggtcttcttccagcaatattactggcag
aagaagtcatccgacacgtacggggaggaaaacctctttcccgtcacggtagactacctc
gtcaaggacacactccttccacttagaccgaagatgaaactgtgcgagagcgtagaggag
gctacggctgctgttgaggagctcatgtccgagctaaaacccaagctttctgaatacctg
tctgcccctgccgctggtggtgaagatggggatggtaacaaagccaaagacttggaaaac
ctcagcccgattcaagaagtggaagaggaacctgatgatgagaatcacagcggtgaatgc
agtgaccaagatggagatgtggaaggtgatggtgacacagatgtctacagtggaagccag
agccagccacttgaagatgaagttgggtcaagcagcgaggatgaagccggcaacttagag
gaggaccctgggagctctcagcaggacgttacgttggttggccaaaggccacggcgcgcc
ccgtgcccggaggacgatgactttatggcggcctttgacaaaatgctgtcggaaagcata
cttcatcgtagccaggactccgtgaagccacaagcggatattgtcatccctatgagccta
aagggcacaggccaacagaaaaaaacatatagcaaccttctggagaagaaaggagaggaa
gacaagaacaccatgaactttatcctgatgacccgcaaaggaaacaagccccagttcaag
agcctggaggttcctgtgtcttcagagcttgcacaaaatctgaaggacagggaggaggct
gaaagagcagagaaagaacaagtgaagatgctcaccttaaacattaacgaaagacaagag
gaagaagattaccaagaaatgcttgcagcacagcagagaccagtggtgttaaacctgaat
cgcgaccgaaggcacaagtatcaacatcccaaaggagctcctgatgcagacctaatcttt
ggaaacaagaagcgctga
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