Rhipicephalus microplus (southern cattle tick): 119175882
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Entry
119175882 CDS
T07403
Symbol
Ssl1
Name
(RefSeq) general transcription factor IIH subunit 2 Ssl1
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
rmp
Rhipicephalus microplus (southern cattle tick)
Pathway
rmp03022
Basal transcription factors
rmp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rmp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
119175882 (Ssl1)
09124 Replication and repair
03420 Nucleotide excision repair
119175882 (Ssl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rmp03021
]
119175882 (Ssl1)
03400 DNA repair and recombination proteins [BR:
rmp03400
]
119175882 (Ssl1)
Transcription machinery [BR:
rmp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
119175882 (Ssl1)
DNA repair and recombination proteins [BR:
rmp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
119175882 (Ssl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ssl1
VWA_2
C1_4
zf-HIT
VWA
Zn_ribbon_GTF2H2
Motif
Other DBs
NCBI-GeneID:
119175882
NCBI-ProteinID:
XP_037282806
LinkDB
All DBs
Position
3:42282891..42310652
Genome browser
AA seq
395 aa
AA seq
DB search
MADEEEGKGYRWETEYERTWEAIQEDESGLLQPSVLDFVHRAKRKQMLAKKNVRLGMMRH
LYVVVDFSESMSEPDLKPTRLICTLKMLELFVEEFFDQNPISNVGVISTCNKRAQKICEL
AGNVGKVVEALQASKTQVPSGEPSLQNSLELAAEVLRHLPVHTSREVLVIMGSLTTCDPG
NIHTTIETMRKCNIRCSVVGLAAEVHVCCKLTKTTGGMYNVILDENHFKDVLFQHAIPPP
VTGNAESSLIRMGFPYHRTETEGKPSLCFCHLDSQNPSDGLSKGGYFCPQCNGKYCSLPV
ECKVCGLTLVSAPHLARSYHHLFALEPFDEVPRDSLPTDTPVICFSCQLSISDKHVYRCV
KCKEDFCLECDLFIHDSLHTCPGCASRLPPPEAPS
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgaagaggaaggcaaaggataccggtgggagaccgaatatgaaagaacttgg
gaagccatccaggaggatgagtctggcctccttcagcccagcgtgctggactttgtccac
agggctaagcgcaaacagatgctggcgaagaaaaatgttcgacttgggatgatgagacac
ttatacgtagttgttgacttttctgaatcgatgtccgagccggatctaaagcccacacgc
ctcatctgcacattgaagatgctagagctctttgtggaggagttctttgaccaaaatccc
atcagcaacgttggtgttatttccacgtgtaacaagagggcacagaagatttgcgaatta
gcaggaaatgtggggaaggtggtagaggcattacaggcttccaagacgcaggttccttcg
ggcgaaccctctttgcagaattctctcgagctcgccgctgaagtcctacgccacttacct
gtgcacaccagtcgggaagtgttggtaatcatgggaagcctgactacctgtgatcctggc
aacatccacaccaccattgagaccatgcgcaagtgcaacattcgttgcagtgtcgtcggc
ttggctgctgaagttcacgtgtgctgcaagcttaccaaaaccaccggaggcatgtacaac
gttattttagatgagaaccatttcaaggacgttcttttccagcatgccatccctccacct
gtcacgggcaatgcagagtcatcactgatcagaatgggttttccctaccatcggacggaa
actgagggcaagccatctctttgtttctgtcacctggacagccaaaacccatcggacgga
ctgagcaaaggtggctacttctgtccacagtgtaacggaaagtactgctctctgcctgtg
gagtgcaaagtgtgcggcttgaccttggtgtcggcgccgcaccttgcacggtcgtaccac
cacctttttgctctggagccgtttgatgaggtgccccgggactcgttacccacagacacg
ccagtaatctgcttctcctgtcagttgtccatatcagacaaacatgtgtatcggtgtgta
aagtgtaaggaggacttctgcctggagtgcgaccttttcattcacgactccctgcacacg
tgccctgggtgtgcaagccggttgccaccacccgaggcaccctcctga
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