Rhipicephalus microplus (southern cattle tick): 119176980
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Entry
119176980 CDS
T07403
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
rmp
Rhipicephalus microplus (southern cattle tick)
Pathway
rmp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rmp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119176980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmp03019
]
119176980
Messenger RNA biogenesis [BR:
rmp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119176980
mRNA degradation factors
5'-3' decay
Decapping complex
119176980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_Prp19
Bac_thur_toxin
EIF3I
DUF1186
ANAPC4_WD40
Motif
Other DBs
NCBI-GeneID:
119176980
NCBI-ProteinID:
XP_037284210
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Position
8:complement(160136986..160448762)
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AA seq
1282 aa
AA seq
DB search
MDTKSQESSLDQSEVTRLLKDILHVGETPASASDGTMTANDMDEGAGVYGDAFDGVTSDG
SLLESLFHPKQQPHDTDPKLILLQEDEEDVSVDMCGTEVQVSVSCPRENDGSSNRVKIKN
IVDYTWDLKYNYGKQISLHMSGTYLAYGLKAATSPVGVVRVLNLKTGDRLLIKGFRGHIR
DMAFAHLATTVLLAIVDEFGILCVYEIHENTTILLLKVERPTDEVSSEYRRVIWCPYVPD
DGARGGNSSQEDNFKFLVATNHEEAEVWNIGQVESRDGSRTLTVPQVRVGLQRIIEHTKP
IIDAAFAPDGTALATAGADGQVRFFQVYMQDPDATPRCLHRWSPHGEKPVTCLFFLDNLK
ACDPDTQFWKFALTGTDRNTELKIWSCETWACLQTIRFVMSPEDWHHCLQKSAAADKLLR
YMHSGGKLAAAASRPSASLHGKQLHAVHIGGAARVARPEWTCRDLRAYQLIAIPNRQREV
ARVMYVGRVQQDTKAELVTLAAFPVALPVLNFTVVEAVRCKFKQTSDTELVNRLGAEPQD
ANAAKEDHSSEKLQEGTMVSLHWMTTKSIQACHIIYPTKAIFGNLSSAVSLSTLSQHSVV
PGCTDHLSDISADADDDERAGKIGRNCDTPSNESKEDRDDDSTFAAVKLLLKPSDFVSPS
SISTSFTPCTTAASTNTAMSLTANGHSEAVRELSEPPQRKLSQGSTASSSSQEVADIMAP
AERLANATNSSDEDDDDEDEELEPGLGYDFAAEDLTSTALPPAADDPSIVAVSTFKSQGL
QDGAWPQPPDNTEVFHAVTTTAVCKHAKMDDTPHVEEKSAGHAVAELELLVSHLAEKTTT
LSKAVNTLSSQFREHHAVLVKLQQAQLYWDEELSALSTETRSNLSSLGTLEAAVIRLSEI
HKTGIDKQSSILAQSLATMLGSQLEKCIANEFKNAVVPTVTKVLETTRCDISRRLEMTET
AIRDAIIKAVKSKMMADTVAQAINTSVQSDVQGTCREILQNTLIPSIERICQDLFLQLNE
AFKRGTREFLHLSQQQIQKHGEARASETMKNIESNVNRALQTFLRDNRAALAPPDFRAPL
DEVVTSAFSNLKIGLLQALAAQQEMLANSLREEMHGALQETVAAAASEGIGSHSSMKTPV
PLADPYLVLHQITLLVRQGQYNMAFQQALSISDLATVVATCEMVSPAVVFGEHPCPLQQP
VLLSLIQQLCADLATSTEIKLKYLEEAVLSLDKENVVTKEHVQVILTQLCQKVEMFLTGA
PAHDKGRMAKRLLMVTQSCLAG
NT seq
3849 nt
NT seq
+upstream
nt +downstream
nt
atggacacaaaatcacaagaaagctctcttgaccagagcgaggtcacgcggctgctgaaa
gacattcttcacgtgggagaaactccagctagtgcttcggatggcaccatgacagccaat
gacatggatgaaggtgctggagtctacggggatgcctttgacggtgtaacgtccgacgga
agtcttttggagagtttatttcatcctaaacagcagccacatgacactgaccctaaactc
atattgctacaggaggatgaagaagatgttagtgtggacatgtgcggaacagaagtgcaa
gtttctgtcagttgtcctcgagaaaatgatggcagtagcaaccgggtaaaaatcaagaat
attgttgattacacctgggatctgaagtacaactatggaaagcaaatttccttgcatatg
tctggaacatacttagcatatggtttgaaagccgcaacttcccctgttggtgtagtgcga
gtgctgaatttgaaaactggcgaccggctccttatcaaaggattcagaggccatattcgg
gacatggcctttgcccatcttgcaaccacagttctgctggctatagtggatgagtttggg
atactctgtgtttatgaaattcatgagaacaccacgattcttttgctaaaggtggagcgc
cctactgatgaagtatcaagtgaatatcgtcgtgtgatatggtgtccctacgtgccagat
gatggtgcaagaggaggaaacagttcacaagaagacaattttaagttcctagtagctacg
aaccacgaagaggcagaagtatggaatattggccaagtagaaagtcgagatggatcgagg
acactgacagtgcctcaagttcgtgttggtcttcagaggatcattgaacacacaaagccc
attattgatgcggcatttgcacccgatggcacggcacttgccactgctggtgctgatgga
caggtgcgcttctttcaagtttatatgcaagaccctgatgcaacacccaggtgccttcat
cgatggtccccacacggcgaaaagcccgtgacttgcctgttctttttggacaatttaaag
gcatgcgatccagacacacagttctggaaatttgctctgactggtacagataggaacact
gaattgaagatatggagctgtgaaacctgggcttgtcttcagactattaggttcgtaatg
tcacctgaagactggcaccattgcctgcaaaagtcagcggcagctgacaaactcttgagg
tacatgcactctggtggaaagcttgctgcggcggcatcccgcccatcggcatctctccac
ggcaagcagctgcatgctgtccacattggtggcgctgcaagagtagcgagaccagagtgg
acatgtcgagacttgcgcgcttaccagctcattgccattcccaacaggcagagagaggtg
gcacgggtcatgtatgttggccgggtgcaacaagacactaaagcagaactggtgactctt
gctgcatttccggtggctcttcctgttctcaatttcacagtggttgaagcagtacgttgc
aagttcaagcagacctctgacacggagcttgtcaatcgccttggtgcagagccacaggat
gctaatgccgctaaggaggatcacagctctgagaaacttcaggaaggcaccatggtgagc
ctccattggatgacgacaaagtcaattcaagcctgccatattatatatcctactaaggct
atttttggcaatctctcatctgcagtttctcttagcacactatcgcaacactctgtagtg
cctggctgtacagaccacttgtctgatattagtgctgatgccgacgatgatgaaagagct
gggaaaattgggcgtaattgtgatactcctagcaatgaatctaaggaagatagggatgat
gattcaacctttgcggcagtgaaactcctgctcaagccaagtgattttgtgtctccttca
agcatttctacttctttcacaccttgtacgacagctgcatccactaatactgccatgtct
cttacagcgaatgggcattccgaagccgttcgtgagctgtcagagccacctcagcgcaag
ttatctcaaggaagcacagcgagttcctcaagtcaggaagttgcggacatcatggcgcct
gcagagaggcttgctaatgctactaatagctcagatgaggatgatgacgatgaggacgaa
gagttggagccaggcttggggtatgactttgcagctgaagacttgacctctactgcactt
ccacccgcagctgatgacccttctattgttgctgtatccactttcaaaagccaggggttg
caggatggagcatggcctcaacctccagacaatactgaagtatttcatgctgttacaaca
actgcagtgtgcaagcatgcaaaaatggatgatacacctcacgttgaggagaaaagtgct
ggccatgcagtggccgaactggagcttttggtctcccaccttgcagagaaaactaccaca
ctttcaaaggcagtaaatactctgagttctcaatttcgggaacaccatgcagtgcttgtg
aagttgcaacaagcacagttgtattgggatgaagagctatcggctttgtcgactgaaacc
agatcaaacctcagttctcttggtactttggaagctgccgttatacggctaagtgaaata
cataagaccggcattgacaaacaatcaagcattctagctcagagcttggccaccatgctt
ggctctcaacttgaaaaatgcatcgccaatgaattcaagaacgctgtggtcccaactgtt
acaaaagttcttgaaacaactaggtgtgacatttctaggaggctcgagatgaccgaaaca
gcgatcagagatgccattatcaaagcagtcaaaagcaagatgatggctgatacagtagct
caagccattaacacctcggtacagtcggacgttcaaggaacgtgtcgtgagattttacaa
aataccctgattccatcaatagagcgcatctgtcaggacttgttcttgcagctcaacgag
gcttttaagaggggcacccgtgagtttctccatctatctcaacagcaaatccaaaaacat
ggtgaagctcgtgcctctgaaaccatgaagaacattgagtcaaatgtcaacagagcactg
caaacctttttgcgggacaacagagctgcactggctcctccagattttcgagctcctctg
gatgaggttgtgacaagtgcattcagtaacctgaagataggacttctacaagcattagct
gcgcaacaggagatgcttgcgaacagtctgagggaagagatgcacggtgcactgcaagag
actgtagccgcagctgcatctgagggaataggaagtcactcgagtatgaagactcctgtc
cctcttgcagacccttatcttgtgcttcaccagattacccttctagtgcgtcagggccag
tataatatggcattccagcaggcactgtctatatctgacctcgccacagttgtggcaacg
tgcgagatggtgtcccctgctgttgtatttggcgagcatccatgccctctacaacaacct
gtgcttctgtcactcatccaacagttatgtgcagacctggcgaccagcactgaaattaag
ttgaaatacctggaagaggctgttctcagcttggacaaagaaaatgttgtgaccaaggaa
catgtacaagtcatcctgacgcagctgtgccaaaaggtcgagatgttcctcacaggagcc
cctgcccatgacaagggacgaatggctaaacgcttgctcatggtcactcagagctgcctt
gccggctag
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