Rhipicephalus microplus (southern cattle tick): 119177748
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Entry
119177748 CDS
T07403
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
rmp
Rhipicephalus microplus (southern cattle tick)
Pathway
rmp03020
RNA polymerase
rmp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rmp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
119177748
09124 Replication and repair
03420 Nucleotide excision repair
119177748
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rmp03021
]
119177748
03400 DNA repair and recombination proteins [BR:
rmp03400
]
119177748
Enzymes [BR:
rmp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
119177748
Transcription machinery [BR:
rmp03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
119177748
DNA repair and recombination proteins [BR:
rmp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
119177748
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
119177748
NCBI-ProteinID:
XP_037284822
LinkDB
All DBs
Position
9:complement(23724789..23781649)
Genome browser
AA seq
1941 aa
AA seq
DB search
MSQIVTSDSKAPLREVKRVQFGILSPDEIRRMSVTEGGIKYPEIYEGGRPKLGGLMDPRQ
GVIDRTSRCQTCAGNMTECPGHFGHIDLAKPVFHCGFLTKTIKILRCVCFYCSKLLVNPN
NPKIKEIVGKTKGQPRKRLAHVYDLCKGKNICEGGDEIDTKLGPDSQVQEDTNKKQGHGG
CGRYQPSIRRSGLDLTAEWKHVNEDSQEKKIALTAERVWEILKHVSEEECMILGMDPRYA
KPDWMLVTVLPVPPLAVRPAVVMFGSARNQDDLTHKLADIVKANNELIRNEQSGAAAHII
AENIKMLQFHVATLVDNEMPGLPRAMQKSGRPLKSIKQRLKSKEGRIRGNLMGKRVDFSA
RTVITPDPNLRINEVGVPRSIAQNLTFPEIVTPFNIDKMHDLVRRGNNQYPGAKYIIRDN
GERIDLRFHPKASDLHLQCGYRVERHVRDGDIIVFNRQPTLHKMSMMGHKIKVLPWSTFR
MNLSVTTPYNADFDGDEMNLHVPQSLETRAEVEQLAMVPRQIITPQSNKPVMGIVQDTLT
AVRKMTKRDIFLEKDQMMTILMFLPIWDGKMPMPAVLKPKPLWTGKQIFSLIIPGNVNLI
RTHSTHPDEEDDGPYKWISPGDTKVLIEHGELISGIVCKKTVGASSGSLMHVVFAELGHE
VAGAFYGHIQTVVNAWLLLEGHTIGIGDTIADKQTFIDIKNTIEKAKHDVIDVIEKAHND
ELEPSPGNTLRQTFENQVNRILNDARDKTGASAQKSLSEFNNFKAMVVSGAKGSKINISQ
VIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGG
REGLIDTAVKTAETGYIQRRLIKAMESVMIAYDGTVRNSNGQVIQLRYGEDGLDGGTVEF
QSMPTLKPSNKSFEKKFRFDACNERYLRKVFTEDVVRELMGSATAVAELEKEWERLKKDR
DILRTIFPTGDSKVVLPCNLQRMLWNAQKIFRVNLRAPTDLSPLRVVQGVEELVKKLVIV
PGEDHLSIQANENATFLFRALLRATLCSKRVAEEFRLSTESFEWLLGEIETRFHQSQGQP
GEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKPKTPSLTVFL
TGAAARDAEKAKDVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFD
PTRISPWLLRVELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMN
SDDGKFQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGIEAITKVYMHLPTTDNKKRIVLT
ETGEFKAIAEWLLETDGTSLMRVLSERDVDPVRTYSNDICEIFAVLGIEAVRKAVEKEMN
HVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAA
SHAEVDYLKGVSENIIMGQLARMGTGAFDLMLDAEKCKYGIEIPMNLPMMGSLCGPGVFF
GSAATPMAGMSPQMTPWATGATPAYGSGWSPNVGSGMTPGGAGFSPSASSDASGFSPGAC
SPAWSPQPGSPASSPASPYIPSPSSPNYSPSSPAYAPSSPSLTPASPTYSPTSPSYSPTS
PSYSPTSPTYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPNYTPASPSYSPTSPSYSPTSP
SYSPTSPSYSPTSPSYSPSSPNYSPQSPSYSPGSPSYSPSSPKYSPTSPSYSPTSPSYSP
GSPQYTPSSPKYSPTSPTYSPTSPSYSPSSPKYSPTSPKYSPTSPTYTPSSPKYSPTSPQ
YSPTSPQYSPTSPKYSPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSSYSPTSPGY
SPSSPTYSPTSPNMEEDSDND
NT seq
5826 nt
NT seq
+upstream
nt +downstream
nt
atgtcacagatcgtgacctccgactcaaaggctcccttgcgggaggtgaagagggtgcag
tttggcattctcagccccgatgaaatacggcgcatgtctgtgactgaagggggcatcaag
taccccgaaatctatgagggcggcaggcccaagctggggggcctcatggacccccggcaa
ggagtcatcgaccgaacctcgcgatgccagacatgcgcgggcaacatgactgagtgcccg
ggccactttggccacattgacctggccaagccggtgttccactgtggcttcctcacaaag
acaatcaagatactgcgatgcgtgtgcttctactgctccaagttgcttgtcaatccgaac
aatcccaagataaaggaaattgtgggcaagacaaaggggcagccgcgcaagcgcctggca
cacgtgtacgacctctgcaaaggcaagaacatttgcgagggcggcgatgaaatcgacact
aagcttggccctgacagccaggttcaggaggacaccaataagaagcagggccatggcggt
tgtggccgctaccagccgagcattcgcaggagtggcctggacctgactgcggagtggaag
catgtcaacgaggactcccaggagaaaaagatcgccctgacggccgagcgcgtctgggag
atcctcaagcacgtctctgaggaggagtgcatgatcctgggcatggacccccgctatgcc
aaacctgactggatgctggtcacagtcctgccagtgcccccgctcgccgtgcgcccagcg
gtcgtcatgttcggctctgcccggaaccaggacgacttgacgcataaactggccgacatc
gtcaaggcaaacaacgagttgatccgcaatgagcaaagtggagcagctgcccacatcatt
gcagagaacatcaagatgcttcaattccatgttgcgaccctggtcgacaacgaaatgccc
ggtttgccaagggccatgcaaaagtccggccgtccgctcaagtcaatcaagcagcggctg
aaaagcaaagaagggcgaattcgaggcaacctcatgggcaagcgagtcgacttttccgcc
cgtacggtcatcaccccagacccaaacctgcgtatcaacgaagtcggggtaccccgctcc
atcgcccagaacctcacctttcccgagatcgtcactccgttcaacatcgacaaaatgcac
gacttggtgaggagaggtaacaatcagtaccccggtgccaaatacatcatccgagacaac
ggtgaaagaattgatctccggtttcaccccaaggccagcgaccttcatcttcagtgtggc
tatcgggtggagcgtcatgtccgggacggtgacatcattgtgtttaaccgtcagccaaca
ctacacaaaatgtccatgatggggcacaagatcaaggtgcttccatggtctacattccga
atgaacctcagtgtgacaaccccatacaatgccgattttgatggagacgagatgaacctg
cacgtgccacagtctctggagacacgtgcggaggtggagcagctggccatggtgccccga
cagatcatcacccctcagtccaacaagcccgtcatgggtattgtgcaggacacactcact
gctgtccgaaagatgaccaagcgggacatcttccttgaaaaggaccagatgatgacgatc
ctgatgttcttgcccatctgggatggcaagatgcccatgccggctgtgctcaagcccaag
cccctgtggacgggcaagcagatattttccctcattatccccggcaacgtaaacctcatc
cgaacacacagcactcacccggacgaggaggacgatggaccctacaagtggatttcgccg
ggtgacaccaaggtgctcattgagcacggcgagctgatcagtggcatagtgtgcaagaag
acagtaggtgcctcgtcaggctcgcttatgcacgtggtgtttgccgagctgggccacgaa
gtggcgggtgccttctacggccacatccagacggtggtcaacgcctggctcctcctggag
ggccacaccatcggtattggtgacaccattgccgacaagcagactttcatcgacatcaag
aacaccatcgagaaggccaagcacgacgtgatagacgtcattgagaaggcccacaacgac
gagctggagccatcaccaggaaacaccctcaggcagaccttcgagaaccaggtcaaccgc
atcctgaacgatgcacgtgacaagactggtgccagcgcccagaagtctctgtccgaattc
aacaacttcaaggccatggtggtctctggagccaagggctcaaaaattaacatttctcag
gttattgcctgtgtgggtcaacagaacgtagaaggcaagcggatcccgttcggcttccgc
aagcgtacgctgccccactttatcaaggacgactatggtcccgagagccgtggcttcgtc
gagaactcctacctggccggtctgaccccttccgagtttttcttccacgccatgggagga
agagagggtctcattgatactgctgtcaagacggccgaaacaggttacatccagcgtcgt
ctgatcaaagctatggaaagtgtaatgattgcctatgacggcacggtgcgaaacagcaat
ggccaggtgatccagctgcgttacggagaggacggcctcgacggaggcaccgttgagttt
cagagcatgcccaccctgaaaccttccaacaaatcctttgaaaagaagttccgttttgat
gcttgcaatgagcgatacctgcgtaaggtgttcaccgaagatgtggtgcgcgaactcatg
ggtagcgccacggctgtcgctgagctggaaaaggagtgggaacggctcaagaaggacaga
gatatactgagaaccatctttccgacaggcgacagcaaggttgtgctgccatgcaacctc
cagaggatgctctggaatgcccagaagattttccgggtgaacctgcgtgcacccaccgac
ctgtctcctcttagggtggtacaaggtgtcgaggagttggtgaagaagcttgtgattgtg
cctggcgaggaccacctaagtatccaggcaaacgagaacgctaccttcctgtttcgtgct
ctgttgcgggccactctgtgctcaaagcgtgtggccgaagagttccgactctccacggag
tctttcgagtggcttctgggcgagatcgaaaccaggttccaccagtcacagggccagcct
ggtgaaatggtcggtgctttggccgcccagtcgctgggtgagccggccacccagatgacc
ctgaacactttccactacgccggtgtgtcggccaagaacgtcacactgggtgtgccccgt
ctgaaagagatcatcaacatctccaagaagcccaagacaccatcactcaccgtcttcctg
acaggtgctgctgcacgagatgctgaaaaggccaaggatgttttgtgccggttggagcac
accactctacgcaaggtgaccgcaaacacggccatctactacgaccccgaccctcaaaac
actgtcatcgccgaggaccaggagtttgtgaacgtctactacgagatgcccgacttcgac
ccaactcgcatatcaccctggctgctccgtgtcgaactggaccgcaagcgtatgacagac
aagaagctcaccatggagcagattgctgagaaaatcaacgccggttttggcgacgacctc
aactgcatcttcaacgacgacaatgccgagaagctggtgcttcggatacgaatcatgaac
agcgacgatggcaagttccaagatgaggaggaacaagtggacaagatggaggacgatgtt
ttccttcgctgcattgaggccaacatgctgagtgacatgacactgcagggaatcgaagcg
atcacaaaggtgtacatgcacctgcctaccacagacaacaagaagcgcatcgtcctcaca
gagacaggagaattcaaggccatcgctgagtggcttctggaaacggacggcaccagcctc
atgcgagtgctgagtgaacgagacgtagaccccgtccggacgtactccaacgacatttgt
gagatcttcgcggtcctgggaatagaggcagtccgaaaggctgtggagaaggaaatgaac
cacgtcatctcgttcgacggctcgtatgtcaactaccgccacttggccctcttgtgtgac
gtgatgaccgccaagggacatctgatggctatcacccgtcacggaatcaaccgtcaagac
acaggggccctcatgaggtgttcctttgaagagactgttgatgtgctcctggatgctgct
tcacacgctgaggttgactacctgaaaggtgtctccgagaacattatcatgggacagctg
gcacgtatgggcacaggtgccttcgacctgatgcttgatgccgagaagtgcaagtatggc
attgagatccccatgaacctgccaatgatgggatccctctgtggccctggagtgttcttt
ggcagcgcagccacaccaatggccggaatgtctcctcagatgacaccatgggcaacaggt
gccactccagcttatggcagcggttggtcgcctaacgtgggaagtggcatgacaccagga
ggcgctggcttctcaccctctgcatcaagtgatgctagtggcttcagcccgggcgcctgc
agccctgcatggtcaccgcagccgggctcgccagcctcgtcacctgcctcaccttacata
cccagccccagctccccgaactactcgccttcgtcacctgcttatgcaccttcctctcct
tctctcactcctgcttccccaacctattccccgacatctccatcatactctcccacatcc
ccgtcctattcgccgacatcgcccacatactctcccacttcccccaactactctcccacg
tcgccgagttactcgccgacatctccatcctactccccgacaagccccagctactctcca
acgtcgccgtcctactccccaacatcgccgtcttattctccgacaagcccgagctactcg
cccacatccccttcctactcgccaacctccccatcgtattctcctacgtctccttcctac
tccccaacttcgccatcttactcgccaaccagtcccagctattccccaagctctcccaac
tacacccctgcgtcgccctcctactcgccgacatcgccatcttattccccaacctcacca
tcctactctcccacctctccatcctactcccctaccagcccatcctactcgcccagttct
cccaattattctcctcagagtcctagctactctccaggtagccccagctattcgccaagc
agccccaagtactctccgacctctccatcgtattctccaacaagtccaagctattctccc
ggatcgccccagtacacaccgtcgtcacccaagtactctccgacctcgccaacctattca
ccgacgtctccgtcgtactctccgtcgagtccgaagtattccccgacaagtccgaagtac
tcgccaacgagtccaacttacacgccttcgtcgcccaagtacagcccgacctcacctcag
tacagtccaacgtcgccgcagtacagccccacatcaccaaagtactctccgacgtcaccc
aagtattctccaacgtcgccaacatattcgcctacttcaccgaagtactcgcctacttcc
cctacttactctcccacaagtcccaagggctcaagctactccccaacaagtccaggctat
tccccatcctcgccaacttatagtcccaccagccccaacatggaagaggatagcgacaat
gattaa
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integrated database retrieval system
