Rhipicephalus microplus (southern cattle tick): 119178783
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Entry
119178783 CDS
T07403
Name
(RefSeq) LOW QUALITY PROTEIN: general transcription and DNA repair factor IIH helicase subunit XPB-like
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
rmp
Rhipicephalus microplus (southern cattle tick)
Pathway
rmp03022
Basal transcription factors
rmp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rmp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
119178783
09124 Replication and repair
03420 Nucleotide excision repair
119178783
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rmp03021
]
119178783
03400 DNA repair and recombination proteins [BR:
rmp03400
]
119178783
Enzymes [BR:
rmp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
119178783
Transcription machinery [BR:
rmp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
119178783
DNA repair and recombination proteins [BR:
rmp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
119178783
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_34
Motif
Other DBs
NCBI-GeneID:
119178783
NCBI-ProteinID:
XP_037285925
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All DBs
Position
9:2620599..2640718
Genome browser
AA seq
777 aa
AA seq
DB search
MGKTKGTKRWKKRQELEENTAEDLCDDDDGNGDGVPAAASQKLSTASVEDEFGAKDYRSQ
MELRPDHASRPLWVAADGHVFXEAFSPVYKHAHDFLIAISEPVCRPQHIHEYKLTSYSLY
AAVSVGLQTQDIIEYLRRLSKTSIPDGIVEFIKLCTVSYGKVKLVLKHNRYFVESPFPDV
LQKLLKDSVIQSCRLRRDAENDTDLSVVTRDILNATLPLKTSTTEDKGDDKSQAANVPED
ITAFYEKMEKDEDDIEDSETVSFEVSQDHIEKLQKRCIELEYPLLAEYDFKNDTVNPDIH
VDLKPSAILRPYQEKSLRKMFGNGRGRSGVIVLPCGAGKSLVGVTACCTVRKRCLVLCNS
GVSVEQWKAQFKMWSTADDSVICRFTSEAKDKPMGCGICITTYSMITHTQRRSWEAEQVM
AWLKEQEWGLMLLDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIQDLNFLIGPK
LYEANWLELQNNGYIAKVQCAEVWCPMTPEFYREYLQARACKKLLLFVMNPNKFRACQFL
IKYHERRSDKIIVFSDNVFSLKHYAIKMNRPYIYGPTSQQERMQILQNFKYNPKVNTIFV
SKVADTSFDLPEANVLIQVSAHGGSRRQEAQRLGRILRAKKGAVAEEYNAFFYSLVSEDT
MEMHYSRKRQRFLVNQGYSYKVITKMEGMDEEELAYRTKEEQTSLLQQVLAANDADAEEE
RVAGETGPTGHRIQISRRAGNMSSMSGADSAVYLEYKTDKKKDMGLRHPLFKRFRKT
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atggggaaaactaaaggtacgaagcgctggaagaagaggcaagaactcgaagaaaacacg
gccgaggacctgtgcgatgacgacgatggaaacggagatggagtacctgcagctgcgagc
cagaaactcagcaccgcttcggtggaagacgaattcggggccaaggactaccgttcccaa
atggaacttaggcccgatcacgcatcccgacctctttgggtggctgctgatggccatgtc
tttntagaggccttttcaccagtgtataagcatgcgcacgattttttgatagctatatcc
gagcctgtctgccggccacagcacattcatgaatacaagctgacatcctattctttgtat
gctgccgtctctgttggacttcagacacaagacatcatagaatacttaaggagacttagc
aagactagcattccagatggtatcgtggagtttataaagctttgcactgtcagctatggt
aaagtgaaacttgtcttgaagcacaatcgatactttgtggaaagtcctttcccggatgta
ctccagaagcttctcaaagattccgtcatacagtcatgtcgcctgaggcgagatgcagaa
aatgacacagatctgagtgttgtcacgagggatattcttaatgccacacttccactcaaa
actagcaccactgaggacaagggtgatgacaaaagtcaagctgccaacgttcctgaagac
attactgccttttacgagaaaatggaaaaagatgaagatgacatagaggactctgaaact
gtgtcatttgaagtcagccaagaccacattgaaaagttacagaagaggtgcatagaactt
gagtaccctttgttggccgagtatgacttcaagaacgacactgtcaatccagacatccac
gttgacctgaagccatctgccatactccgaccatatcaggaaaagagcttgagaaagatg
tttggaaatggacgtggaagatcaggggtcatcgtccttccatgcggtgctggaaaatcg
ctggtgggagtcactgcctgctgcactgtgcgcaagcgatgtctcgtgctgtgcaactct
ggtgtctctgtggaacagtggaaagcacagttcaagatgtggtcgacagcagacgacagc
gtcatatgcagatttacgtcagaggccaaggacaaacctatgggctgcggtatctgcatc
acaacgtattccatgatcacgcacacacagagacgttcctgggaggccgagcaggtcatg
gcttggctgaaagagcaggaatggggtctcatgctgctcgatgaggtacataccattcca
gccaagatgttcaggcgggtgttgacaatagtacaggcacactgcaagctaggtctaacg
gccactttggttcgagaagatgacaagatccaggacctgaactttctaatagggccaaag
ctgtacgaggcgaattggctggagcttcagaacaatggttacattgccaaggtgcagtgt
gccgaggtatggtgcccaatgacaccagagttctatagggagtatctgcaagctagagca
tgcaagaagttgttgttgttcgtcatgaacccaaacaagttcagggcctgccagtttctc
ataaaataccacgagaggcgaagtgacaagatcatagtgttctccgacaacgtcttttcc
ctgaagcactatgccatcaagatgaacaggccttacatctacggtcccacatcccagcaa
gagcgaatgcagatcctgcagaacttcaagtacaatccgaaagtgaacaccatctttgtg
tccaaggtggccgacacctcctttgatttgcccgaggcaaatgtcctcattcaagtttct
gctcacgggggctccaggaggcaggaggctcagcgtttgggtcgtatcctcagggccaaa
aaaggtgctgtggctgaggagtacaatgccttcttctattccctggtgtctgaagacact
atggagatgcattattcgcgaaagagacaacgtttcttggtgaatcaaggctacagctac
aaggtcattaccaagatggaaggcatggatgaggaggagcttgcataccgcacgaaggaa
gagcagacgagcctgctgcagcaggtgctggctgccaatgatgctgatgcagaggaggaa
cgagttgctggcgaaactggaccaactggccaccgtatccagatatcgaggagggctgga
aacatgagctcaatgtctggtgcagacagtgcagtgtacctcgagtacaaaaccgataag
aaaaaggacatgggcctgaggcatccgctgttcaagcgtttcaggaaaacttag
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