Rhipicephalus microplus (southern cattle tick): 119179437
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Entry
119179437 CDS
T07403
Name
(RefSeq) uncharacterized protein LOC119179437 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
rmp
Rhipicephalus microplus (southern cattle tick)
Pathway
rmp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rmp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119179437
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rmp03021
]
119179437
03019 Messenger RNA biogenesis [BR:
rmp03019
]
119179437
Transcription machinery [BR:
rmp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
119179437
Messenger RNA biogenesis [BR:
rmp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
119179437
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
zf_PCFS4
Pcf11_C
Pfc11_Clp1_ID
Motif
Other DBs
NCBI-GeneID:
119179437
NCBI-ProteinID:
XP_037286404
LinkDB
All DBs
Position
2:278256912..278310047
Genome browser
AA seq
1695 aa
AA seq
DB search
MEEDVCEEYKSSLLDLTCNSKPLINMLTMLAEENVQQAPRIVRTIEEHLQKVPIEMKLPV
LYLIDSIMKNVGGDYRALFTQNIVSNFCNVFEKGDERMRMQLFKLRQTWLDIFPNKKLYA
LDTRVKQMDPAWPIIAKEPQQTSIHVNPKFLEAKTKGQEQETMEQQAAKLASLNALNKAT
TEKILNAGVPSTEGEQVQRLLLQKQQEFIFLQRQKLQLELQMQQQQLRQKQEAEQLLKSL
KPPSSVAATHASTSTPVSVGVAVRPQLPRPSAPGAARDPRLQQRSVPSANSNKPPPVSSA
PSFQLGSVIVAPAHGTAQNTTSSAPSTVLEKATPDKRENNKVSAREKHAAIKSPPRKFRI
PKTSDRKKDDEDGGKNGETEPSSPTKTSPSKSRKNAEDRDERQQHGRAGSGGKSSSSSSS
SGSSSQGRGGKKGRGKNSKGKSEENVRPNGDVEMMDVVPSGDVDMRVQVEKKRDAVDTTQ
EAPQHKRQRGHADDSLADFDYRKPPDRPGGISNASQRGWAQYKAKHPDEFKSPLRPAREN
MDVRDEDLRQMQDSMGRGGYPGPMQPSVDRFGRPVLRKLMTDPRFRSHVGQSGNSDMSLQ
QQQQMYEMLADPDMFLQQTDEQMRAGRLNPDLHRELKAELEKISQFRKSQPQSPIVPLNW
QGGPPGPGFPPWNQLSFGGVNKAMPPLSEPAPGFGTIRVDTKMRKVQFVDDVAVVLMDGS
ETRQIMFKGPPKRVFIDDMEPVSLPFDGTAHEFVSKRTGKKRTIKFGAPLREIFLDGVPY
SAQFDNSPIAIKTADGEVHVIRLEPQPPTVDIEKRPPEHVLRALNLHPEKLADTDSDLRT
LPPEVKLPVTESEKSMDVDMRLPSSEAAKDVDLRKRGDVDESGTWNSPQQAGQGGWGQSR
PQQPPEGGFQQNKESGGWVRYGSGSEERAGVGNNWPQQPPLGQPQQDPNIRPPWPRGPPG
PGDWNNNFGNDFMEGRGMPRVGPGRRGNQQPGFGGEEYPSYFREDFPQPQMHPHHVGVGE
VRPGFLQPQFPPCRPHFTAGEPGLPPMGPPRLGGPPPPPQALLASSNLAPPPPLAPPPMV
VAGPHLVGPEAAARGQPVYMVGASQPQPMQQPMQPPLQQPMQQQMQQPMQQQMQQPMQQP
MPQSMQQPPPLQQPIQQPMQQPMQPPMQPPMQPPMQQPLQQPPTQPPALQTAAQQPPLQP
PAMSQMPVATLPSPFPAVLADEHMHQQPSQAPTAAPAPPAALDVNVGELFSKLVAAGILK
QSTGNGNAAGSQPAEQYQSMGAHLQKKKRRRPRGEHTRQEPKKPIEGVPQLSFSRTDQLK
IKHPSVINALHVGTQCASCGLRFTDEKCEKYRQHLDWHFRANRRDKDGARKAFSRKWFYE
VEDWIQFEEIEDLEERARSFFEQQATVEQDQSSNSPTAIKSVPASGDETGNACAVCEEAF
QLFWAEEEEQWHFRDAIRIENKVYHPACYEDFKRAAEAPSPVKMETEEAQPEVAPQEEDK
SMDVDSGVKEEAATEATTEPIEQSGSDEKQHQEMVVEEAATVAQEGTEGNEAACDKGGLE
IKDENASGNLQDDPIVVVDNLGEFGVSLSDAEQNNDEEERPPETVEPKVVVKSTGGIVMK
VKAESIQPPVSPVSHSTTADAPDTAEGGGSNEPAAPAPDESASDEEFRPPTPDPRFQSLP
PVQRGNELSGLCCIM
NT seq
5088 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagacgtgtgcgaagagtacaagtcgtcgctgctggatctcacatgcaacagc
aagccgctcatcaatatgctcacgatgttggccgaagagaacgtccagcaagctccgagg
atagtgcgaaccatcgaagagcacttgcagaaggttcccatagaaatgaagctgcctgta
ctatacctaattgattccattatgaagaatgttggtggtgactatcgcgccttgttcaca
caaaacatcgtttccaacttttgcaacgttttcgaaaagggggatgagcgaatgcgcatg
cagctcttcaagttgcgccaaacgtggctggacattttcccgaacaagaagttgtacgcc
ctcgacacgcgggtaaaacagatggacccagcctggcctatcatagcaaaggaaccccag
caaacgtcaatacatgtcaaccccaagtttctcgaagctaaaacgaaaggacaagagcag
gagacaatggaacagcaagcagctaagcttgctagtttaaatgcacttaacaaagcaaca
actgaaaagatcttaaatgctggtgtgccttcaacagaaggggaacaagttcagaggttg
cttctgcaaaaacaacaggagttcatcttcctacaaaggcaaaagcttcaacttgagttg
caaatgcagcagcagcaactccggcagaagcaagaagccgagcaactcctgaaaagcctc
aagccgccttccagcgtggcggcaacccatgcgtctacttctactcctgtttctgtcggt
gtggctgttcgtcctcagttgccacgaccatcggcacctggtgcagcacgtgaccccagg
ttacagcagcgctcagtgccgtcagccaacagtaacaaacctcctccggtttcatctgca
ccatcgtttcagcttgggtctgtcatcgtagctccagctcatggtaccgctcaaaacact
acatcctctgctccatcgaccgttttagagaaggcaactcccgacaaacgtgaaaacaac
aaggtatctgcccgggagaagcatgccgccatcaagtctccacccagaaagttccgcatt
cctaagacgagtgaccgcaagaaagacgacgaggacggtggaaaaaatggcgaaactgag
ccgtcttcacctacaaagacgtcgccaagcaagtcacgcaagaatgccgaggacagggac
gaaagacagcagcatggcagggctggcagtgggggcaaatcatcgtcatcgtcgtcttcg
tcgggttcttcatctcagggcaggggtggaaagaaaggtcgcgggaagaacagcaagggc
aaaagtgaagagaatgtgaggcctaatggtgacgttgaaatgatggatgtggtgccttca
ggtgatgtggacatgcgggttcaggtggagaagaaacgagacgctgtggatacaactcag
gaggctccgcagcacaagagacaacgaggtcatgctgatgatagcctcgccgactttgac
tatcgcaagccacctgatcgtccaggaggcatttcaaatgcctcccagcgtggctgggcg
cagtacaaagccaagcacccagatgaattcaaaagcccacttcggccagctcgagaaaat
atggacgtcagagacgaggacctccggcaaatgcaggattccatggggagaggtggctac
ccgggacccatgcaaccttctgttgaccgttttggcagacctgtgctccggaaactcatg
actgacccaaggtttcgaagtcacgtgggccagtcgggtaacagtgacatgagccttcag
caacagcagcagatgtacgagatgctggccgatcctgacatgttcctgcagcaaacggat
gagcagatgcgggcaggacgcctcaaccccgacttgcatagggagctgaaagccgagctg
gagaaaatctcccagtttcgcaagtcgcagccacagtcgcccatcgtgcctcttaattgg
caaggaggacctccaggaccagggttcccaccctggaaccaactttcattcggaggtgtg
aacaaagcgatgccccctctgtccgagcctgctccaggttttgggactattagggttgac
actaagatgcgcaaagttcagtttgtggatgatgtcgctgtggtgctcatggatggcagt
gagacaagacagatcatgttcaagggaccgccaaagcgtgtctttattgatgacatggaa
cctgtgtctttgccatttgatggcacggcacatgaatttgtttcgaaacgaactggaaag
aagcgtacaatcaagtttggagctccattgcgtgaaatattcctggacggggtgccctac
agtgcgcagtttgacaacagtcctattgcgatcaaaacagctgatggtgaggtgcatgtg
atcaggctagagccacaacctccaaccgtggacatcgagaagcgaccaccggagcatgta
cttcgcgccctcaaccttcatccggaaaaactggccgacacagactcggatttgcgcacc
cttccaccggaagtaaagcttcctgtgacagagagtgaaaagagtatggatgtcgatatg
agactacctagctccgaagcagcaaaagatgttgacctgaggaaacgtggcgacgtggat
gagagtggcacgtggaatagtccacaacaggcagggcagggtggttgggggcagtcacgg
ccacagcagccgcccgaaggcggttttcagcaaaacaaagagagcggtggctgggttagg
tatggcagtgggtctgaagaacgggcaggtgtcggtaataattggccgcaacagccgccc
ctcggtcagccacaacaagatccaaacattcgtccaccttggccccgagggcccccagga
cctggtgattggaacaacaactttgggaatgatttcatggagggtcgtggcatgccaaga
gtgggcccaggtagaaggggcaatcagcagccaggctttggtggcgaggagtacccctct
tacttccgggaggactttcctcaacctcagatgcaccctcatcacgtcggtgtcggagaa
gttcggccaggcttcctgcagccgcagttcccgccatgcagaccacattttactgccggg
gagccaggactccctccgatgggcccgcctagacttggtggacccccaccaccccctcag
gctcttttggcgtcatcaaacttagctcctcctcctccacttgcaccaccccccatggtg
gttgccgggccgcacctagtggggcctgaggcagctgcccgagggcaaccggtttacatg
gttggagccagccagccgcaaccaatgcagcagcctatgcagccgccacttcagcagcca
atgcaacagcaaatgcagcagccaatgcaacagcaaatgcagcagccaatgcagcaacca
atgccgcagtctatgcagcaaccaccaccattacagcaaccaattcaacagccaatgcag
caaccaatgcagccaccaatgcagccgccaatgcagccaccaatgcaacagccactgcag
caacctccaacgcaaccacctgccttgcagacagcagcgcagcagccacctctgcaacca
ccagctatgtctcagatgccagtagccacgcttccaagccctttcccagctgtactggca
gatgagcacatgcaccagcagccatcacaagctccaacagctgctccggccccgccagcg
gcattggatgtcaatgtgggtgagctcttctccaagctggttgctgcaggcatcctcaag
cagagcacaggcaatgggaatgcagcagggagccagcctgcagagcagtaccaatcaatg
ggtgcccacttgcagaagaagaaacggaggagaccacgaggcgagcacacaagacaggag
cccaagaagcccattgaaggcgtcccgcagctcagtttctccaggacagaccagctcaag
atcaagcacccaagcgtgatcaatgccctgcatgtgggcacccagtgtgcgtcctgcggc
ctgcgattcacagatgagaagtgcgagaagtatcggcagcacttggactggcatttcagg
gccaatcgcagggataaggacggcgcccggaaggccttttcccgaaagtggttctacgaa
gtggaggattggattcagtttgaagagatagaagatctggaagaacgagcgaggagcttc
tttgagcagcaagccactgtggaacaggaccagagcagcaactcgcccacggcaatcaaa
agtgtcccggcttctggcgacgagaccggcaacgcgtgtgctgtctgtgaagaggctttc
cagcttttctgggcagaagaggaggagcagtggcacttcagggatgccattcgcatcgag
aataaagtgtaccacccagcctgctatgaagacttcaaaagggcggcagaagcacctagt
cctgtcaaaatggagactgaagaagctcaaccggaagttgcccctcaagaggaagataag
agcatggacgtcgactctggcgtcaaggaagaagccgccaccgaagccacaaccgagccc
atcgagcagagtggctccgacgagaagcaacatcaggaaatggtagtggaggaagctgcc
actgtagcacaggaaggtactgagggtaatgaggccgcttgtgataaggggggattagaa
ataaaagatgagaatgctagcggcaatttgcaggacgatcccatagtggtagtagataat
ctcggggagtttggagtgtccctgagtgatgctgaacagaacaatgacgaagaagagcga
ccgccagagacggttgagccaaaagttgtggtcaaaagcactgggggcattgtgatgaaa
gtgaaagcagagagcattcagccaccggtctctcctgtgtctcactcgacaactgccgac
gcgcctgacactgccgagggcggtggcagcaacgagccggcagcacctgcacctgacgag
tccgcaagtgacgaagagttccggccgcctactcccgatccacgttttcagtcactgccg
ccagtgcaaagggggaacgagttatcagggctctgctgcattatgtga
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integrated database retrieval system
