Rhipicephalus microplus (southern cattle tick): 119179458
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Entry
119179458 CDS
T07403
Name
(RefSeq) PAN2-PAN3 deadenylation complex subunit pan3-like isoform X1
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
rmp
Rhipicephalus microplus (southern cattle tick)
Pathway
rmp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rmp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119179458
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmp03019
]
119179458
Messenger RNA biogenesis [BR:
rmp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119179458
mRNA degradation factors
3'-5' decay
Pan complex
119179458
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pan3_PK
zf-CCCH
zf-CCCH_4
zf_CCCH_4
Pkinase
zf-CCCH_2
Torus
zf-CCCH_9
Motif
Other DBs
NCBI-GeneID:
119179458
NCBI-ProteinID:
XP_037286430
LinkDB
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Position
1:205040778..205088132
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AA seq
783 aa
AA seq
DB search
MNGSLVGPKKTAICRYFATGGTCFYGSECQFLHGPSTTPCLNTDLGIRDSQLSLMVRTPE
GTTSPALDPVFQAFSPPSNLPAESKLKTYMNVSARTISPSSLDKSKMFSSSNSISPNEIT
SALSSLALDSARKTPNPGAAEFVPMNSLLGPSQLTHSTSTPSFSQFSGGLNLTPGTSPYS
RLAPVSEAVLSSTFRESLSGNIPAFDTDTPSGLSLGKMESPGLSPDSSPLVSRRSQSPMS
VGGYLNAQRESFLPTTVYQEFLGGTTYFYQHEEAANTTEEGQAVLLPEYQMYPGNPTHIE
FMKPKANAPSFFLPDELRMDILHRQSLSLAQRNPEVNTDLPAEVDNYHNICPLEQSSSNG
PPKSSTFGYVTSVYKATNIKNGCCYCLRRVHGFRLSNTKCMAVVDLWKKLQHSNLVHLRE
VFTTKAFGDHSMVFVYDYHAGAETLMNQYFSQPSVPTLNGFCSPIFPQPSNGLTRPFSHG
KPALGSLRQHAGLLPESLIWAFVVQLSSVLRTIHAAGLACRSFEPSKILVMGKSRLRLNC
CGIMDVLTFDSAVPSAKALVPHYQQEDLVSLGKLVLALACNTMAAIQRENLQQSMDLVSR
NYSTDLRNLILYLLSSPPRTHSINDIMPMIGARFYTQLDAAQMRSDVIENELAKEVENGR
LFRLLVKLGTVSERPEFHLDTSWSETGDRYMLKLFRDYLFHQVTKDNRPWIDMAHVVQAL
NKLDAGVPEKICLMSRDEQNILVVSYAELKQCLESSFSELLSATSSVPPTSSLPPPSANQ
HAR
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atgaacggttctctcgtaggaccgaagaaaaccgcaatatgtcgctacttcgctaccggg
ggaacttgtttctacggttccgagtgtcaattcctgcacggaccgtctaccactccttgc
ttgaacactgacctggggatacgtgattcacagctgtcactcatggtgcggacacccgaa
ggtaccacaagtcccgccttggaccctgttttccaagctttttcaccgccatcgaacctc
ccagctgagtcgaaactcaaaacatacatgaatgtatccgcacgcacaatttcaccgtcc
tcactggacaaatcgaaaatgttttcatcttcaaacagcatctcacccaacgaaattaca
agtgcactttcatcattggctttggactctgcgagaaagactccgaaccctggtgctgct
gagtttgtaccaatgaacagcctgttggggcccagtcagttaacacacagcaccagcaca
ccctcattctcacagttttctggaggcttaaacttgacccctggcaccagcccatatagc
cgattagcacctgtttcagaagctgtactatcttccacatttcgagaaagtttgagtggg
aacattccggcctttgatacagacactccatctggcctctctttgggtaaaatggaaagt
cctggcttgtctcctgatagctctcctcttgtgagccgccgcagccagtcaccaatgtca
gttggaggctacttgaacgcacagcgagaatcttttcttccaactacagtttaccaggaa
ttcctcggtggcaccacttacttttaccagcacgaagaagccgcaaacacgacagaggaa
ggtcaggctgttcttcttccggagtaccaaatgtatcctggcaacccgacgcacatagag
ttcatgaagcccaaagccaacgcaccctccttttttctcccagatgagctgagaatggac
atcttgcatcgtcagagtttaagccttgctcaaagaaacccagaagtgaacactgacctg
ccagcagaagtggacaactatcataacatttgcccgctggaacaaagttcctcgaacggg
ccacccaagtccagcacttttggatatgttacatctgtctacaaggcaacaaacatcaag
aatggctgctgctactgcttgagaagggtgcatggcttccgtcttagcaataccaagtgc
atggcagtggttgacctttggaaaaagctgcagcactccaaccttgtgcacctccgggaa
gtgttcaccactaaggcgttcggagaccactcaatggtgtttgtctatgactaccacgct
ggtgcggaaaccctgatgaaccagtacttcagccagccttctgtgccaacgctgaatggt
ttctgctcgcccatctttccgcagccttccaatgggctcacaaggcctttttcacatgga
aagcctgctctgggctccttgcgccagcatgccggactgctgcctgagagccttatttgg
gcttttgtggtccagctaagctcggtgctgcgtaccattcacgcagctggccttgcgtgc
cgttcctttgagccttctaaaattctggtcatgggcaagtcacgtctgcgcctaaactgc
tgtggcatcatggatgtgctcacttttgactcagctgtgcccagcgcaaaggcacttgtg
ccgcactatcagcaagaagacttggtttccttggggaagttggtacttgctctggcctgc
aacaccatggctgcgattcagcgcgaaaacttgcagcagtcaatggatctggtgtcccgc
aactactcaactgacctcaggaacctgatcttgtacctgctgtcttcgccacctcgtacg
cacagtattaacgacataatgccaatgattggagcccgcttctacacacagctggacgcg
gcacagatgcggagtgatgtcatcgaaaacgaacttgcaaaggaagtggaaaatggaagg
ctcttcaggctgcttgtgaaacttggcacagtcagtgaaagaccagagtttcatctcgac
acatcgtggtccgagactggggatcgttacatgcttaagttgttcagagattacctcttc
catcaagtcacaaaggataacaggccttggatagacatggctcatgtagtgcaggcattg
aataagctggatgcgggtgtgccagagaaaatctgcctcatgtcgcgggatgagcaaaac
atccttgttgtgagctacgctgagctgaagcagtgcctcgagtcttcgttcagcgagctg
ctgtcggccacttcctcagtgccgcctacatcgtctcttcccccaccttcggctaatcag
catgcccggtga
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