Rhipicephalus microplus (southern cattle tick): 119180218
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Entry
119180218 CDS
T07403
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
rmp
Rhipicephalus microplus (southern cattle tick)
Pathway
rmp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rmp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119180218
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmp03019
]
119180218
Messenger RNA biogenesis [BR:
rmp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119180218
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
119180218
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
119180218
NCBI-ProteinID:
XP_037287258
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All DBs
Position
10:complement(126147504..126203729)
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AA seq
734 aa
AA seq
DB search
MADRRKLQGEIERCLKKVTEGVEQFEDIWQKVYNATNTNQKEKYEADLKKEIKKLQRLRD
QIKTWMASSEIKDKRILMDNRKLIETQMERFKVVERETKTKAYSKEGLGGAQKVDPAQKE
KEDITIWLSNSIASLNIHVDQFESELESLTIGVKKKKNDNQDRVDELKTLLSRHRYHILQ
LETLMRMLDNGTVEVCKIKKIKEDVEYYIESCQDPDFEENEFLYDDLDLRDMADFLTKAS
AATTGLEHADNCILDSATPNANDEVPGAETPASTNSSSPVPSPGLTNHSRSSEQSSQVVK
TARSVVANSGVVNATVNSKAPAPITSRNNSTSSQSSSNSSPSVNSHQNHAVVSPPLTPYA
VAAAANAKGTPSPPPSTAPSIDGAATVDHQGHFHRAPSPTQHNSTNATTNNSGSQQLAHS
GPTLADHGSTVSSAAASLYASLASSQGRPSSPTAPSILHMNGPMVDKSGDSMSSLKSIAE
QAVLNAGLEGRLQSPSSQQQQQQQQQQQQLQQSSLQQSLQTLQQQQQQQQQQQQQQVQSS
SCERSMFESVVGSKEVPRPQQQQQQQPAPTAEAHIPPLRGVAPLGPAPLSKECFYQLRLL
EAASMHMPHPSDSERLRPYLPRNPTQVPSYYPQTLPHCDTVEFFQKLSTETLFFVFYYME
GSKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEYEQGTYIYFDYEKWSQRRKEG
FTFEYRYLEDRDLN
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atggccgatagaaggaaactccaaggagaaatagaacggtgtttaaagaaagtaaccgaa
ggcgtggagcaattcgaggacatttggcaaaaggtctacaatgcaactaatacgaaccaa
aaagaaaagtatgaggccgaccttaagaaagagattaagaagctccagaggttacgagac
caaattaaaacatggatggcgtctagcgagatcaaggacaagcggattcttatggataac
cggaagttgatagagacgcaaatggagaggttcaaggtggtcgagcgggagacgaagacc
aaggcgtactcgaaggaaggcctgggcggtgcgcagaaggtggaccccgcccagaaggag
aaggaggacatcaccatctggctctccaactccatcgcctcgctcaacatccacgtcgac
caattcgagagcgagctcgagtccctaactattggcgtcaagaagaagaaaaacgacaac
caggaccgagtagacgagcttaagacgctgctgtcgaggcatcggtaccacatcctgcag
ctcgagaccctaatgaggatgttggacaacggcacggtcgaggtgtgcaagatcaagaag
atcaaggaggatgtcgagtactacatcgagtcttgtcaggacccggactttgaggagaac
gagttcctgtacgatgacctagacctgcgggacatggcggacttcctgaccaaggcgagt
gcagccacgacaggcctcgagcacgcggacaactgcatcctggactccgcgacgcccaat
gccaacgacgaagtgccgggtgcggaaacgcccgcctccaccaactcgagctcaccggtg
cctagcccagggctcaccaatcattccaggtccagtgagcagagcagtcaagtggtcaaa
acggcgcggagtgtggtggccaactccggcgtcgtcaacgcgacggtcaacagcaaggca
ccggcacccatcacctctcggaacaacagcacatcgtcacagagcagcagtaacagttcg
ccatcagtcaactcccatcaaaatcatgcggtggtatctccaccactaacgccctatgcc
gttgcagcggcagcgaatgccaaaggcacgccctcccctccgccgtcgacggcaccctcc
atcgacggagcggccaccgtggaccatcagggccatttccaccgggcaccctcgcccaca
cagcacaacagcaccaatgccaccacaaacaacagtgggtcacagcaactggcgcacagc
gggccgacgttggcggaccacggcagcacagtgtcatctgcggcagcttccttgtacgcg
tcgttggcgagttctcaaggccggccaagctcgcccacggcgccgtcgatactgcacatg
aatggtcccatggtcgacaagagcggggactccatgtcgtcgctgaagtctatagcggag
caggcggtactaaatgctggcctcgagggtcgtctacagtcaccatcatcgcaacagcag
caacagcagcagcagcagcagcagcagcttcaacaatcctcgctccagcagtcacttcag
acacttcaacaacagcagcagcagcagcagcagcagcaacagcagcaagtgcagtcatcg
tcgtgtgagcgaagtatgttcgagtccgtcgtgggcagcaaggaagttccgcggccacag
cagcagcaacagcagcaacccgcaccgacggcagaggcacacatcccgcccctaagaggc
gtggcccccttaggccccgcacctttgtccaaggagtgcttctaccagctgcggctgctg
gaggcggcctccatgcacatgccccacccgtcggactccgagcggcttaggccttacctt
ccgcggaacccgacgcaggtgcccagttactacccacagaccttgcctcactgcgacacg
gtggagttcttccagaagctgtccaccgagacgcttttttttgtattctattacatggag
ggatccaaggcacagtacctggcagccaaggccttaaaaaagcagtcctggaggttccac
accaagtacatgatgtggttccagaggcacgaggagcccaagaccatcacggacgagtac
gaacaggggacgtacatctactttgattacgagaagtggagtcagaggcgcaaggaaggt
ttcacgttcgagtataggtacttagaagacagagatctgaactga
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