Rhipicephalus microplus (southern cattle tick): 119181386
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Entry
119181386 CDS
T07403
Name
(RefSeq) exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
rmp
Rhipicephalus microplus (southern cattle tick)
Pathway
rmp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rmp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119181386
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmp03019
]
119181386
03041 Spliceosome [BR:
rmp03041
]
119181386
03009 Ribosome biogenesis [BR:
rmp03009
]
119181386
03016 Transfer RNA biogenesis [BR:
rmp03016
]
119181386
Enzymes [BR:
rmp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119181386
Messenger RNA biogenesis [BR:
rmp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
119181386
Spliceosome [BR:
rmp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
119181386
Complex C
U4/U6.U5 tri-SnRNP related factors
119181386
Ribosome biogenesis [BR:
rmp03009
]
Eukaryotic type
Pre-60S particles
Helicases
119181386
Transfer RNA biogenesis [BR:
rmp03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
119181386
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
AAA_22
AAA_15
ATPase_2
DIP0205-like_N
Motif
Other DBs
NCBI-GeneID:
119181386
NCBI-ProteinID:
XP_037288511
LinkDB
All DBs
Position
11:94677877..94718047
Genome browser
AA seq
1031 aa
AA seq
DB search
MDDLFSVFDDAPKSKFLAAATVKKENLKNEERKRDDTGAGDFVRAIIDGKRLLDNDFEEE
PNKKRKISDILDDFDPADYLPRVHVHSVESVEGCVHEVAVPDGVEYVPMKRDREGPRARD
YPFVLDPFQEEAILCLEHNQSVLVSAHTSAGKTVVAEYAISLALQEKQRVIYTTPIKALS
NQKFRQFTEDFKDVGLMTGDVTINPSASCLIMTTEILRSMLYRGSEIMREVGWVIFDEIH
YMRDKERGVVWEETIILLPDNVRYVFLSATIPNAKQFAEWICHLHKQPCHVVYTEYRPVP
LQHYIFPAGGGGLYLVVDESGNFKEDKFNEAMTVLQNAGEAAKGDSALKGRKGGFKGESN
CYKIVRMIMERDYAPVIVFSFSKKECEAYATQIAQMDLTTFSEKKLVMEVFQNAMDSLSE
EDQKLPQVGQVFPLLKRGIAVHHSGLLPILKETIEILFAEGLVKALFATETFAMGLNMPA
RTVLFTNARKFDGKEFRWVTSGEYIQMSGRAGRRGLDDRGIVILMVDEKMSPASGKDIVK
GLPDPINSAFHLTYNMVLNLMRVEEVNPEYILERSFFQFQNNVSIPVYYEKLQKLQAELD
SFKIPNEPEVAAYYKVRQQLASLSRELQAFLTHPDYCTPYLQPGRMVHINNGTHDFGWGL
VINYTKKKVVTSRGQPGLKDPVVIVDVLLNVSKESAQTKLTSALTPPKPGEKGEAQVVPL
TLDNISKMSTIRLFYNQDLKSSDNRTAALKTVKEVEDRFPKGVPLVDPFEDLKIKDANMK
EVVKKIEAFENRMYAHPMHSHPDLPNIYAEYEKKMKVAQEIREVKNEIKKAKALLQMEEL
KCRKRVLRRLGYATASDVMEIKGKVACEVSSADELLVTEMIFNNMFNELNAHQATALLSC
LVFQEKSNEMPNLTEELSGPLRQMQDIARRIARVTKDAKLCVDEDTYVNSFKPHLMDVMY
AWSKGASFAHVCRMTDVYEGSIIRCMRRLEELLRQIVQAAKCIGNTELENKFSEAIKHMK
RDIVFAASLYL
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atggacgacctgttcagtgtttttgacgatgcgcctaaatctaagtttttagccgcagct
acagtgaaaaaagagaacctaaagaatgaagaacggaagcgcgacgatactggcgccggc
gactttgtgcgagccattattgatggcaagcgacttttggacaacgacttcgaagaagaa
cccaacaagaagaggaagatttcggacatattggacgactttgaccctgctgattatctg
ccgcgcgttcatgtgcatagcgtggagtccgtggaaggctgcgtgcacgaggtggcggta
cctgatggagtggagtacgtgcccatgaaacgggaccgagagggccccagagcacgagac
tacccgtttgtcctcgacccgttccaagaggaggccatcctgtgtcttgagcacaaccag
agcgtcctcgtatcagcccacacctcggctggaaaaactgttgtggctgagtatgcgata
tcattggcgctgcaagagaagcagcgggtgatctacacgacacccatcaaagcactcagc
aaccagaaatttcggcagttcacggaagactttaaggacgtgggtttgatgactggtgat
gtgaccatcaaccccagtgccagctgccttataatgacgacagaaattctgagaagtatg
ctgtacagggggtctgaaatcatgcgggaggtgggctgggtcatctttgacgagattcac
tacatgagagacaaagaaaggggcgttgtctgggaagagacaatcatcttgctccccgac
aatgtccgttacgtctttctgtctgccaccatccctaatgcgaagcagtttgccgaatgg
atctgtcacctgcataaacagccatgccatgtggtgtacacggaatatcgtccagtgccc
ttacaacactacattttcccggctggtggaggtgggctctaccttgttgtagatgaatct
ggaaacttcaaggaggacaagttcaacgaagcgatgactgtgcttcagaatgctggcgag
gctgccaaaggggactctgcccttaaagggcgcaagggaggatttaaaggcgagtcaaac
tgctacaagattgtaaggatgattatggaacgtgactatgcgcctgttatcgtctttagt
ttcagcaaaaaggaatgtgaggcatatgccacacagatagcccagatggatttgaccact
tttagtgagaaaaaacttgtgatggaggtcttccaaaatgccatggactctctttcggag
gaagaccagaaacttcctcaggtcgggcaggtgttcccgctcctgaagcgaggcatagcg
gtgcatcattcaggcctgctgcccatcttgaaggagaccatcgagattctctttgcagaa
gggcttgtcaaggcactgtttgcaactgagacatttgctatgggactcaacatgccagcc
cgtacggtgctcttcacgaatgcgaggaagtttgatggcaaggaattcagatgggtcacc
tccggagagtacatccagatgagtggtcgtgctggacggcgtggtctggatgaccgtggt
attgtcatcctcatggtggatgagaaaatgagtccagcgtctggcaaggatattgtcaag
ggcttgcccgaccccatcaacagtgcgttccatctgacctacaacatggtgttgaacttg
atgcgagtggaagaggtgaatcccgagtacatcttggagcggtccttcttccagttccag
aacaatgtgtccataccagtctattacgagaagctgcagaagctccaggccgagctggac
tcgttcaagatccccaacgagccggaagtggccgcctactacaaggtgcggcagcagttg
gcttccctgtctcgggagctgcaggcttttctcacccaccccgactactgcactccgtac
ctgcagccagggcgcatggtgcacataaacaatggcactcacgatttcggctggggcttg
gttataaactacacgaagaagaaggttgtcacttcaagaggacagcctggcctcaaggat
cccgtggtgattgtggacgtgctcctcaacgtttcgaaggagagtgcccagacgaaactg
acgtcagcgttgactcctcccaagccgggagagaaaggggaagcgcaggtggttccgctg
acccttgacaacatcagcaagatgagcactattcggctgttctacaaccaggacctcaag
tcctctgacaacagaactgcagcgctcaaaacagtcaaggaggttgaagataggtttcca
aaaggcgtcccacttgtcgacccctttgaggacctcaaaataaaggatgcgaacatgaag
gaagttgtcaagaaaatcgaggcattcgagaaccggatgtacgctcatcctatgcattcg
catcctgaccttccaaatatttatgcggaatacgagaaaaaaatgaaggttgcacaggag
atcagggaggtcaagaacgagatcaagaaggccaaggcactgctccagatggaggaactc
aagtgccgcaagcgggttctccggcggctcggctatgccacggcctccgatgtcatggag
atcaagggcaaggtcgcctgtgaagtcagcagtgccgatgagctgcttgtgacggagatg
atcttcaacaacatgttcaacgagctcaacgcacaccaggctacggccttgttgagttgc
ctggtctttcaggagaagtcgaacgagatgcccaacctcactgaagagctgtctggcccg
ctgcgacagatgcaggacatagcgcggaggatagcacgggtcaccaaggatgccaagctg
tgcgtagacgaagacacctacgtcaactcgttcaagccacacctaatggacgtcatgtac
gcctggagcaaaggggcctccttcgcgcacgtctgccgcatgacggatgtctatgaaggc
agcataatcaggtgcatgcgacggctggaggaactgttgcggcagatagttcaggctgca
aagtgcataggaaacacagaactggaaaacaagttttccgaagcaatcaagcacatgaag
agggacattgtgtttgcagctagcttgtacctatag
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integrated database retrieval system
